Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03558 ATGTTTGTACTCCTTTTTGGAACAGGAAGATTCTTGTTTAACGTACTCTGGATGATATTTCTGTCGTTTCCGGGTCAATTAAGTGCAGTTGAAGTAACAATGTCCTCCTCAAGGCCTAGCCAATCGTCCAGCAACAATTCTGGCAGATCTAGATCATCAAGACACAGTGCTAGGCTTGCTCAGACAACTTTAGATGCAAAATTGCATGCAACTTTTGAGGAATCAGGTAGTTCTTTTGACTATTCCAATTCAGTGAGATTGTCTCCTGCTGGTACAGGCACAGTCAGTGGAGATCATCAACCAAGGCCTGATAGAGTAACAACTGCTTACCTCAATCAGATACAGAAAAGCAAGCTTATTCAGCCATTTGGGTGCTTGCTAGCCTTAGATGAGAAAACATGTAAGGTCATTGCTTATAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGTCATGCTGTCCCCAGTGTTGGTGACCACCCTTCTCTTGGCATTGGCACTGACATAAGGACTATTTTCACTGCCCCAAGTGCTGCTGCTATTCAGAAGGCACTAGGATTTGGGGAGGTTTCACTTCTTAACCCCATTCTAGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACCGGCAGTGTGATCATCGATTTTGAGCCGGTCAAGCCTCATGAAGTTCCCATGACTGCAGCCGGTGCCCTGCAATCCTACAAGCTTGCAGCAAAAGCAATAACTAGGCTGCAATCCTTGCCTACTGGGAACATGGAAACACTATGTGACACAATGGTTCAAGAGGTTTTTGAGCTCACAGGTTATGACAGAGTGATGGCTTATAAATTTCATGATGATGATCATGGAGAAGTGATTGCTGAGGTGAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCACTACCCAGCCACTGATGTTCCCCAGGTGACACGCTTTTTGTTTACGAAGAACAAGGTGCGTATGATAGTTGATTGTCGTGCAAAGCATGTGAAGGTGCTTCAAGACCAGAAAATTCCATTTGATTTAACCTTGTGTGGATCAACCTTGAGGGCTGCTCATAGTTGCCACTTGCAATACATGGAGAACATGAATTCTAGTGCTTCCTTGGTTATGGCAGTTGTGGTCAATGACAATGATGAAGATGGGGATAGCTCTGATGCTGTTCAGCCACAGAAGAGAAAGAGACTATGGGGTTTAGTAGTTTGTCATCACACTACTCCCAGGTTTGTTCCTTTCCCTCTTAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAACTAGAGATAGAGTATCAGATTGTTGAGAAGAACATCCTGCGAACTCAAACACTCTTGTGTGATATGCTGATGCGAGATGCGCCCCTAGGCATTGTATCACAAAGTCCTAATATAATGGATCTTGTGAAATGTGAGGGAGCAGCCCTGTTGTATAAGAACAAGGTGTGGAGATTAGGGGTAACACCAAGTGAATCTCAGATAAGAGAGATAGCTTTGTGGCTCTCTGAGTGCCATAGGGATTCCACAGGTTTGAGTACGGATAGCTTGTCTGATGCAGGCTTCCCAGGGGCTGCTGCTCTTGGTGATATTGCATGTGGAATGGCAGCTGTCAGAATAGCTTCCAAAGATATAGTTTTCTGGTTTCGGTCTCACACGGCCGCAGAAATCCGATGGGGTGGTGCAAAGCATGAACCTGGTGAAAGGGATGATGGTAGGAGGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGCTTACCCTGGAAGGACTATGAAATGGATGGCATTCATTCATTGCAGTTAATACTGAGAAATGCATTCAAAGAGACAGAGAGTATGGAGATAAGCACATATGCTATCAATACAAGACTAGGTGATTTGAAGATTGAAGGGATGCAAGAGCTGGAAGCAGTGACAAGTGAGATGGTAAGGTTAATTGAAACAGCAACTGTGCCAATTTTGGCGGTTGATGTTAATGGGATGGTCAACGGATGGAATACAAAAATTGCTGAGTTGACATGTCTTCCAGTTGATCAAGCTATTGGGAAGCATTTACTCACTCTTGTTGAAGATTCTTCAGTAGATAGAGTCAAGAAGATGTTGGACATGGCACTGCAGGGTGAGGAAGAGAAAAATGTGCAATTTGAGATCAAAACACATGATTTGAAGATGGATTCTGGTCCTATCAGCCTGGTGGTCAATGCTTGTGCAAGCAGGGATCTTCAAGAAAACGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTGATGGACAAGTTCACCCGAATTGAAGGTGACTACAAGGCAATTGTACAGAACCCAAACCCATTGATCCCTCCAATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAATGGAATTCAGCTATGACAAAAATAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGGGAGGTTTTTGGCACCCAGATAGCTTGTTGTCGCCTAAGGAATCAAGAAGCTGTTGTTAATTTTAGCATTGTACTTAACAAAGCCATGGCTGGTTTGGAAACAGATAAGGTTCCTTTTGGTTTCGTTACTCGGGATGGGAAGCATGTAGAATGTCTGCTTTCTGTGAGTAAGAAATTGGATGCAGAGGGCGTAGTTACCGGGATCTTCTGTTTCTTGCAACTGGCTAGTCCAGAGCTGCAACAAGCGTTACACATCCAGCACCTATCTGAACAAACTGCTTTGAAGAGACTCAAAGCTTTAACTTATTTGAAAAGGCAAATCCGGACTCCTTTGTATGGGATTACCTTCTCTCAGAAATTGTTAGAGGGTACTGAGTTAGGAGCTGAACAAAAACAATTTCTGCAAACTGGCACTCGCTGTCAGCACCAGCTCAGCAAAATTCTGGATGACTCAGATATTGCGACCATCATTGATGGCTACCTGGATTTGGAGATGGTTGAATTCACTCTGCATGAAGTTTTGGTTGCCTCCCTAAGTCAAGTCATGACAGAGAGTAATGCAAAGGGTGTCCGAGTAGTCAATGATGTTGAAGAGAAGATCACAACAGAAACCTTATATGGTGATAGTCTCAGGCTTCAGCAAGTCTTAGCTGACTTTTTATTGATTTCCATCAATTTCACACCAACTGGAGGTCAGGTTGTTGTAGCAGCCACGTTAACCCAACAGCAGCTAGGGAAACTAGTCCATCTTGCTAATTTGGAGCTCAGCATAACACATGATGGTTTTGGGGTTCCAGAAACATTGCTGAACCAGATGTTTGGACGCGATGGACATGAATCTGAGGAGGGTATCAGCATGCTGATTAGCAGAAAGCTGCTAAAGCTCATGAATGGAGACGTACGTTATATAAGGGAAGCAGGCAAATCATCTTTCATCTTATCTGTTGAACTTGCCGCAGCACACAAATCCAACACTTAA 3495 0.4383 MFVLLFGTGRFLFNVLWMIFLSFPGQLSAVEVTMSSSRPSQSSSNNSGRSRSSRHSARLAQTTLDAKLHATFEESGSSFDYSNSVRLSPAGTGTVSGDHQPRPDRVTTAYLNQIQKSKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPSLGIGTDIRTIFTAPSAAAIQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSVIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPTGNMETLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVIAEVKRPGLEPYLGLHYPATDVPQVTRFLFTKNKVRMIVDCRAKHVKVLQDQKIPFDLTLCGSTLRAAHSCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKRKRLWGLVVCHHTTPRFVPFPLRYACEFLAQVFAIHVNKELEIEYQIVEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCEGAALLYKNKVWRLGVTPSESQIREIALWLSECHRDSTGLSTDSLSDAGFPGAAALGDIACGMAAVRIASKDIVFWFRSHTAAEIRWGGAKHEPGERDDGRRMHPRSSFKAFLEVVKTRSLPWKDYEMDGIHSLQLILRNAFKETESMEISTYAINTRLGDLKIEGMQELEAVTSEMVRLIETATVPILAVDVNGMVNGWNTKIAELTCLPVDQAIGKHLLTLVEDSSVDRVKKMLDMALQGEEEKNVQFEIKTHDLKMDSGPISLVVNACASRDLQENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMTKITGWKREEVMDKMLLGEVFGTQIACCRLRNQEAVVNFSIVLNKAMAGLETDKVPFGFVTRDGKHVECLLSVSKKLDAEGVVTGIFCFLQLASPELQQALHIQHLSEQTALKRLKALTYLKRQIRTPLYGITFSQKLLEGTELGAEQKQFLQTGTRCQHQLSKILDDSDIATIIDGYLDLEMVEFTLHEVLVASLSQVMTESNAKGVRVVNDVEEKITTETLYGDSLRLQQVLADFLLISINFTPTGGQVVVAATLTQQQLGKLVHLANLELSITHDGFGVPETLLNQMFGRDGHESEEGISMLISRKLLKLMNGDVRYIREAGKSSFILSVELAAAHKSNT 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03558 1164 SUPERFAMILY GAF domain-like 449 628 - -
Pumo5g03558 1164 SMART pas_2 659 725 IPR000014 -
Pumo5g03558 1164 SMART pas_2 789 858 IPR000014 -
Pumo5g03558 1164 Pfam Phytochrome region 454 629 IPR013515 GO:0006355|GO:0009584
Pumo5g03558 1164 Pfam PAS fold 109 225 IPR013654 GO:0006355
Pumo5g03558 1164 ProSiteProfiles PAS repeat profile. 790 842 IPR000014 -
Pumo5g03558 1164 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 991 1150 IPR036890 -
Pumo5g03558 1164 SUPERFAMILY PYP-like sensor domain (PAS domain) 663 770 IPR035965 -
Pumo5g03558 1164 Pfam PAS fold 660 774 IPR013767 GO:0006355
Pumo5g03558 1164 Pfam PAS fold 790 912 IPR013767 GO:0006355
Pumo5g03558 1164 CDD HisKA 945 989 IPR003661 GO:0000155|GO:0007165
Pumo5g03558 1164 CDD PAS 801 912 IPR000014 -
Pumo5g03558 1164 SMART HisKA_10 934 998 IPR003661 GO:0000155|GO:0007165
Pumo5g03558 1164 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1046 1155 IPR003594 -
Pumo5g03558 1164 SUPERFAMILY PYP-like sensor domain (PAS domain) 804 910 IPR035965 -
Pumo5g03558 1164 Gene3D - 446 619 IPR043150 -
Pumo5g03558 1164 SUPERFAMILY GAF domain-like 238 438 - -
Pumo5g03558 1164 MobiDBLite consensus disorder prediction 35 58 - -
Pumo5g03558 1164 FunFam Phytochrome 653 784 - -
Pumo5g03558 1164 Pfam GAF domain 258 441 IPR003018 GO:0005515
Pumo5g03558 1164 PIRSF Phytochrome_conventional 34 1164 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pumo5g03558 1164 Gene3D PAS domain 651 788 - -
Pumo5g03558 1164 Gene3D PAS domain 113 361 - -
Pumo5g03558 1164 PRINTS Phytochrome signature 752 769 IPR001294 GO:0006355|GO:0009584
Pumo5g03558 1164 PRINTS Phytochrome signature 589 607 IPR001294 GO:0006355|GO:0009584
Pumo5g03558 1164 PRINTS Phytochrome signature 660 676 IPR001294 GO:0006355|GO:0009584
Pumo5g03558 1164 PRINTS Phytochrome signature 173 195 IPR001294 GO:0006355|GO:0009584
Pumo5g03558 1164 PRINTS Phytochrome signature 358 379 IPR001294 GO:0006355|GO:0009584
Pumo5g03558 1164 PRINTS Phytochrome signature 556 575 IPR001294 GO:0006355|GO:0009584
Pumo5g03558 1164 PRINTS Phytochrome signature 273 292 IPR001294 GO:0006355|GO:0009584
Pumo5g03558 1164 PRINTS Phytochrome signature 471 491 IPR001294 GO:0006355|GO:0009584
Pumo5g03558 1164 PRINTS Phytochrome signature 679 694 IPR001294 GO:0006355|GO:0009584
Pumo5g03558 1164 PRINTS Phytochrome signature 772 792 IPR001294 GO:0006355|GO:0009584
Pumo5g03558 1164 Coils Coil 438 458 - -
Pumo5g03558 1164 Gene3D - 974 1151 IPR036890 -
Pumo5g03558 1164 PANTHER TWO-COMPONENT HISTIDINE KINASE 946 1149 - -
Pumo5g03558 1164 Gene3D - 239 602 IPR029016 -
Pumo5g03558 1164 SMART gaf_1 258 451 IPR003018 GO:0005515
Pumo5g03558 1164 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 258 431 IPR016132 -
Pumo5g03558 1164 Gene3D PAS domain 803 915 - -
Pumo5g03558 1164 SUPERFAMILY PYP-like sensor domain (PAS domain) 114 227 IPR035965 -
Pumo5g03558 1164 NCBIfam PAS domain S-box protein 664 780 IPR000014 -
Pumo5g03558 1164 FunFam Phytochrome 446 577 - -
Pumo5g03558 1164 ProSiteProfiles PAS repeat profile. 657 727 IPR000014 -
Pumo5g03558 1164 CDD PAS 668 774 IPR000014 -
Pumo5g03558 1164 SMART HKATPase_4 1046 1158 IPR003594 -
Pumo5g03558 1164 ProSiteProfiles Histidine kinase domain profile. 941 1160 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03558 Pumo-Chr5 84971867 84977902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03558 34 1161 Histidine Kinase Gene Family AT1G09570 76.637 0.0 1809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03558 K12120 - gmx:100791098 2013.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03558 5 84971867 84977902 Pumo5g03558 5 84971867 84977902 ECH