Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03550 ATGGCGTTTCCTCCATTTACCAAACACCCCCTCTCGAACTATACCAGAGGCCAAACACTACTTCCTACTTCTTCCTCCGTTAGGTTGCAATGTTTAGACTCCAAGTCTCACTTCAACAACGTCCTCCGAGCCCACCGCCACGCCACTGGGCCCAGCCTCAAGCCCACACCGAGTTTCGTTCCCTCCGCCGTCGCCACGCCCAATTCCTCCCTCCTTAGCGAAGAGGCCTTCAAAGGACTTGGCCGCGACTTCGACCAAAACGACGGCGAATTTGGCCACGCCGCCGAATCCGTTCACCCCGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTCGATTCCCTCCAGAGCCGTGGGATTACTCGCCTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTGGAAGGTAGAGATATCATTGCTCGAGCGAAGACCGGTACCGGAAAGACATTAGCCTTCGGAATTCCAATTATTAAAGGCCTCACTGAAGATGACCGTGCACCTTCTCACAGGCGGTCTGGTCAGCTTCCGAGACTTTTGGTGCTTGCACCTACGAGGGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCACCTTATCTCAACAGTGTTTGTGTTTATGGGGGTGTTTCTTATGTTACACAGCAGAGTGCGCTTTCACGTGGAGTTGACGTGGTGGTTGGAACGCCGGGGAGAATAATTGACTTGATAAATGGGAACAGCCTTAAGCTGAGTGAGGTTCAGTATTTGGTCCTCGATGAAGCGGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAGAATCTCCCAACGCAGAGGCAGAGCATGCTTTTCTCTGCTACCATGCCCGGTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAACCCGCTCACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGAATAAAACTTTATGCTATAGCAGCCACTGCCACTTCAAAGCGGACAATTCTTTCTGATCTTGTAACTGTTTACGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAATGTCTGAAGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGGACATTGAATGGTTTCCGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTCGTACATCGCTCTGGCCGTACTGGGCGTGCAGGAAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGTGATGTAGGCTGCAAGTTTGAATTTGTTAGCCCACCAGCTATGGAAGAAGTTTTGGAGTCATCTGCCGAGCAGGTTGTTGCCACACTTAATGGAGTTCATCCTGAGTCTGTTCAGTTTTTCACCCCAACTGCACAAAAACTGATTGAAGAACAAGGAGTAAGTGCCCTTGCAGCTGCACTTGCACAACTGAGTGGATTTTCCCGACCTCCATCATCCCGGTCTCTTATCACCCACGAACAGGGATGGACTACATTGCAACTAACTCGAGATTCAGATAATAGAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCAGATGTTTATTCTGCAGCTGCTGATGAAGTTGGGAAAATCCATTTAATTGCAGATGAAAGGGTTCTAGGAGCCGTTTTTGATCTTCCTGAGGAGATTGCTAAAGAGTTACTTAATAGGGACATACCACCTGGAAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAGGTTCTCTGACAGAGATCGAAGTAGCCGAAGAGGTTCTACTTCTAGGGGAGGTTTTAGTTCTAGGGGAGGTTCCGCTTCTAGGGACCAGAGAGGTTTTAAATCCTCACGGGGATGGGATGCGGAAGACTCTGATGATGATGACTTTGGTGGTCGATCTAGTAGGAGAGGTGGTAGAAATTTTAAAACTGGCAACAGATGGTCTCGAGCTGCAGGTAAAAGCAGTGGGGATGATTGGCTAATTGGAGGAGGTAGACGATCAAGCAGGCCTTCATCATCAGACAGATTTGGAGGGGCCTGTTTTAATTGCGGGGAATCTGGTCATCGTGCATCAGATTGTCCAAACTCTTCAAACAGGCGAAGCTTTTTTTAA 2295 0.4758 MAFPPFTKHPLSNYTRGQTLLPTSSSVRLQCLDSKSHFNNVLRAHRHATGPSLKPTPSFVPSAVATPNSSLLSEEAFKGLGRDFDQNDGEFGHAAESVHPDELDISKLDLPSRLVDSLQSRGITRLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDDRAPSHRRSGQLPRLLVLAPTRELAKQVEKEIKESAPYLNSVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILENLPTQRQSMLFSATMPGWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLALTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGCKFEFVSPPAMEEVLESSAEQVVATLNGVHPESVQFFTPTAQKLIEEQGVSALAAALAQLSGFSRPPSSRSLITHEQGWTTLQLTRDSDNRRYFSARSVTGFLSDVYSAAADEVGKIHLIADERVLGAVFDLPEEIAKELLNRDIPPGNTISKITKLPPLQDDGPPSDFYGRFSDRDRSSRRGSTSRGGFSSRGGSASRDQRGFKSSRGWDAEDSDDDDFGGRSSRRGGRNFKTGNRWSRAAGKSSGDDWLIGGGRRSSRPSSSDRFGGACFNCGESGHRASDCPNSSNRRSFF 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03550 764 ProSiteProfiles Zinc finger CCHC-type profile. 741 756 IPR001878 GO:0003676|GO:0008270
Pumo5g03550 764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 311 IPR014001 -
Pumo5g03550 764 Pfam Zinc knuckle 740 756 IPR001878 GO:0003676|GO:0008270
Pumo5g03550 764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 485 IPR001650 -
Pumo5g03550 764 Gene3D - 329 529 IPR027417 -
Pumo5g03550 764 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 101 693 - -
Pumo5g03550 764 SUPERFAMILY Retrovirus zinc finger-like domains 724 760 IPR036875 GO:0003676|GO:0008270
Pumo5g03550 764 SMART ultradead3 122 328 IPR014001 -
Pumo5g03550 764 SMART c2hcfinal6 740 756 IPR001878 GO:0003676|GO:0008270
Pumo5g03550 764 Pfam Helicase conserved C-terminal domain 338 445 IPR001650 -
Pumo5g03550 764 SMART helicmild6 365 445 IPR001650 -
Pumo5g03550 764 Gene3D - 104 315 IPR027417 -
Pumo5g03550 764 MobiDBLite consensus disorder prediction 639 653 - -
Pumo5g03550 764 FunFam ATP-dependent RNA helicase RhlE 95 314 - -
Pumo5g03550 764 CDD SF2_C_DEAD 325 454 - -
Pumo5g03550 764 CDD GUCT_Hera 539 618 - -
Pumo5g03550 764 FunFam Nucleolar RNA helicase II 333 523 - -
Pumo5g03550 764 CDD DEADc 114 312 - -
Pumo5g03550 764 MobiDBLite consensus disorder prediction 654 673 - -
Pumo5g03550 764 Pfam GUCT (NUC152) domain 532 631 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pumo5g03550 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 466 IPR027417 -
Pumo5g03550 764 MobiDBLite consensus disorder prediction 614 739 - -
Pumo5g03550 764 Gene3D - 713 762 - -
Pumo5g03550 764 Pfam DEAD/DEAH box helicase 127 300 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03550 Pumo-Chr5 84840218 84845902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03550 61 467 Eukaryotic Initiation Factors Gene Family AT1G72730 35.337 4.87e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03550 - - gmx:100789516 1271.91