Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03540 ATGGGCAACGGCACTTCTCGTGTTGTTGGCTGTTTGGTGCCATTTAATGGCAAAAGTGGGGTTGATTTGGAGTTTCTAGAGCCATTAGATGAAGGCTTAGGCCATTCCTTTTGTTATGTGAGGCCATCTATTTTTGAATCTCCAGCCATTACCCCATCAAACTCTGAGAGGTTTACTGTTGATTCTAGTACCCTTGATTCTGAGACATTGAGTGGCTCATTCAGACATGAGAGCATTGAAGAAAGGCCTGGCAAGAATGTGCCAGAAACCACGTTCAAAACGATATCAGGGGCTTCGGTTAGTGCGAATGTTTCCACTGCCAGGACTGGTAACCAGAATGCATTACTTGCTAGTGATGTTTTAGAGCCTGCTGCATCATTTGAGGGAACCTCGTCGTTTGCCGCAATCCCTTTGCAGCCTGTTCCCCGGTGTTCTGGACCTTTGAACGGTTTCATGTCGGGACCTTTGGAGCGATTTGCTTCTGGTCCGTTGGATAAGAGCGGTGGTTTCATGTCTGGGCCGATAGAGAAGGGAGTTATGTCGGGTCCTCTTGATGCCACTGACAAGTCCAACTTTTCAGCGCCACTTGCACGTGGTCGTCGGAGGCCACACCTCCAACGCCTCATGAGAAGTGTGAGTGGACCTATGAGAAACACTTTTTCTCGGACCTTTTCGAAGCACTCCGTGGGTGGCAGTTGGGTGCAGAGGTTATTCCTTCATCCGGTGTCTCAACTATCTTGGAATTCCAAAGAGGCAAAGTTTCGACCTGAAGTTTCTAGAAACTGTGCTGAAGTTGTTGGATCGTCCGAATTGGAGTATAAATATACACAAAATTTGCAGTGGGCTCAAGGTAAGGCTGGTGAAGATAGGGTTCATGTTGTGCTCTCGGAAGAACAAGGGTGGTTGTTTATTGGGATATATGATGGTTTTAGTGGACCAGATGCACCTGATTTTCTGATGAGTCATCTTTATAAGTTTATAGACAAGGAATTAGAAGGGTTGCTCTGGGATTATGAGGATAATCCCGTTGATCCACTTAAACCTGAAGTCCTTAAAAATGGAAATGATGTAGTTGCTCTAGAATGCGGTAGGGAGGAAATGTCAGATGCTCATACCATTTCAAATGAAGAAAATTCTTGCTGTTTAGAAAATTCTTGTCCAATAATGGTCAAGGATCAATCATCTAATAGTGAGATAGTGGAGGTAAATGCTGAAGTTAAGGTAAATATTGGACAGAAAAATTGTGGAAGTCCCAGTAATGTACATACTGTTCCTGCATCTGTTCCAATAGGACAATTGAGTGGTCAAGGCAGAAGAAGTGTGCGACTTTACGAGCTACTTCAGATGGAATCTTGGAATGAACAGGTGTCAGAACAAGCCAAGGATTCTGTGGTTCCTGGGGAAATAACACAAGAGAGGCAGATGAGATTCTGCTCACCTGATGGTAAAGAGGATAGATCTAGACATCCGGATGAAGGTCCCACTACTTCAGGGGAAAATGGAAGTGCTGGGTTTAATTCGACCAACCAGGAGCCAATAGCTTCTTTTTCTGTTTCAGGACAAAGGCAGAATTCAAGAAAGTCATTTATTGGTACAAAAATCAGAAAAATGTACAGGAAGCAGAAGTCCTTGCGTAAGAAACTTTTTCCTTGGAGTTATGATTGGCATAGGGAGGAAACTAGTGTTGACAAGAAATTAGTGGAATTCTCGGGACCCTTTAGAATATGCAAGTCTGGAGTAGATCATAATGCAGTTTTAAGAGCAATGGCTCGGGCTCTTGAAAGAACAGAGGAGGCATACCTGAAAATGGTGGAGAATAATATGGACAAAAATCCAGAGCTTGCCTTGATGGGATCATGTGTTTTAGTGATGCTGATGAAGGATCAAGATGTTTATGTTATGAACCTTGGAGATAGTCGTGTAATTTTGGCTCAAGAACGACCAAATGATCGTCATCCTAATCCGTGTCTCATCAAAGATGACATGAGGCATAGGAATCGATCTAGAGAGTCATTAGTGGGCATGGAGCTGGATAGAATTTCGGAGGAGTCCCCAGTACACAATATAAACAAGCATGTGAACAAGACAAACAAAAACAGAGAGATTTCCATGTGCAGATTGAAAATGAGGGCTGTTCAGCTTTCCACAGATCACAGCACAAGTATTGAAGAGGAAGTTTTTAGAATAAGAGCAGAACACCCTGATGATAATCAGGCCATATTTAATGATCGAGTGAAAGGACAATTAAAAGTGACCAGAGCATTTGGTGCTGGATTCCTGAAGAGGCCGTCTTTTAATGAACCGCTACTGAAGATGTTTCGAGTTGATTATGTGGGCAATGCTCCTTACGTAAGTTGCGCATCTTCCATTCTTCATCACCGACTTTCCTCAAGTGATCGGTTCCTGGTGCTCTCCTCTGATGGTCTGTACCAATATTTCAGCAATGAAGAGGTAGTTGCCCATGTCACATGGTTCATGGAAAATGTTCCCGAAGGTGATCCTGCACAATACCTTATTGCAGAGCTTCTCTTCCGTGCGGCTAAAAAGAATGGAATGGATTTTCATGAATTGTTAGATATTCCTCATGGAGATAGGCGTAAATATCATGATGATGTTTCTGTTATGGTGGTTTCGTTGGAGGGAAGGATATGGAGATCATCGGGATAA 2667 0.4323 MGNGTSRVVGCLVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFESPAITPSNSERFTVDSSTLDSETLSGSFRHESIEERPGKNVPETTFKTISGASVSANVSTARTGNQNALLASDVLEPAASFEGTSSFAAIPLQPVPRCSGPLNGFMSGPLERFASGPLDKSGGFMSGPIEKGVMSGPLDATDKSNFSAPLARGRRRPHLQRLMRSVSGPMRNTFSRTFSKHSVGGSWVQRLFLHPVSQLSWNSKEAKFRPEVSRNCAEVVGSSELEYKYTQNLQWAQGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYKFIDKELEGLLWDYEDNPVDPLKPEVLKNGNDVVALECGREEMSDAHTISNEENSCCLENSCPIMVKDQSSNSEIVEVNAEVKVNIGQKNCGSPSNVHTVPASVPIGQLSGQGRRSVRLYELLQMESWNEQVSEQAKDSVVPGEITQERQMRFCSPDGKEDRSRHPDEGPTTSGENGSAGFNSTNQEPIASFSVSGQRQNSRKSFIGTKIRKMYRKQKSLRKKLFPWSYDWHREETSVDKKLVEFSGPFRICKSGVDHNAVLRAMARALERTEEAYLKMVENNMDKNPELALMGSCVLVMLMKDQDVYVMNLGDSRVILAQERPNDRHPNPCLIKDDMRHRNRSRESLVGMELDRISEESPVHNINKHVNKTNKNREISMCRLKMRAVQLSTDHSTSIEEEVFRIRAEHPDDNQAIFNDRVKGQLKVTRAFGAGFLKRPSFNEPLLKMFRVDYVGNAPYVSCASSILHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03540 888 SMART PP2C_4 272 877 IPR001932 -
Pumo5g03540 888 MobiDBLite consensus disorder prediction 455 524 - -
Pumo5g03540 888 MobiDBLite consensus disorder prediction 477 493 - -
Pumo5g03540 888 Gene3D - 250 408 IPR036457 -
Pumo5g03540 888 MobiDBLite consensus disorder prediction 494 524 - -
Pumo5g03540 888 Pfam Protein phosphatase 2C 704 850 IPR001932 -
Pumo5g03540 888 Gene3D - 518 885 IPR036457 -
Pumo5g03540 888 SUPERFAMILY PP2C-like 284 880 IPR036457 -
Pumo5g03540 888 PANTHER PROTEIN PHOSPHATASE 2C 275 878 IPR015655 GO:0004722|GO:0006470
Pumo5g03540 888 ProSiteProfiles PPM-type phosphatase domain profile. 272 879 IPR001932 -
Pumo5g03540 888 FunFam Protein phosphatase 2C 32 248 417 - -
Pumo5g03540 888 CDD PP2Cc 585 879 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03540 Pumo-Chr5 84731281 84738777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03540 1 888 PP2C-type Phosphatase Gene Family AT2G46920 63.466 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03540 - - gmx:100786856 1725.29