Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03539 ATGGCGTCTTCATTATCAGCTCAATTGGTTCATTGTCAGAACTCACTTCCACCTCTTCAGGGTAATTTTAGCCAAGATGTGTCTAAGGTTCAAAGGTCACGTGTGGTATGTTGCGGTACCAGATCACCGCTTGGTTTTGGTAAAGCATTGACATCAAGATCACATAATGCCCTGAGGTTTTCTGTCACGCAACAATCTGGAGCAAGCTCAATTGGATATAGAAGAATGACATGTGTCAATGCTGCAGACAATGTTGTAGAGCTTCAAGCCAAAGTGACAACCAAGTGTTTCTTTGATATAGAAGCTGGGGGTGAACCTGTGGGCAGGGTTGTTTTGGGCCTATTTGGAGAGGTCGTTCCTAAAACAGTTGAAAATTTCCGTGCCTTGTGCACAGGTGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGTATAATCAAAGATTTCATGATTCAAGGAGGAGACTTTACAGAAGGAAATGGAACTGGTGGAATTAGTATCTATGGTCCTAGTTTTAAGGATGAGAGTTTTGCCTTGAAGCATACCGGTCCTGGAGTTTTGAGCATGGCGAATGCTGGTCCTAATACTAATGGTAGTCAATTTTTCATTTGTACTGTAAAGACTCCATGGCTAGACAATCGTCACGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGAAGACACTTGAATCCCAGGAGACGAGTAGGTTAGATGTCCCTCGGAAGCCTTGCAGAATTGTTAATTGCGGAGAACTGCCTATAGATGGTTGA 780 0.4282 MASSLSAQLVHCQNSLPPLQGNFSQDVSKVQRSRVVCCGTRSPLGFGKALTSRSHNALRFSVTQQSGASSIGYRRMTCVNAADNVVELQAKVTTKCFFDIEAGGEPVGRVVLGLFGEVVPKTVENFRALCTGEKGYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGPSFKDESFALKHTGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVKTLESQETSRLDVPRKPCRIVNCGELPIDG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03539 259 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 138 155 IPR020892 GO:0003755|GO:0006457
Pumo5g03539 259 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 97 254 IPR002130 GO:0000413|GO:0003755
Pumo5g03539 259 FunFam Peptidyl-prolyl cis-trans isomerase 81 259 - -
Pumo5g03539 259 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 IPR002130 GO:0000413|GO:0003755
Pumo5g03539 259 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 155 IPR002130 GO:0000413|GO:0003755
Pumo5g03539 259 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 213 IPR002130 GO:0000413|GO:0003755
Pumo5g03539 259 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 214 229 IPR002130 GO:0000413|GO:0003755
Pumo5g03539 259 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Pumo5g03539 259 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 95 255 - -
Pumo5g03539 259 SUPERFAMILY Cyclophilin-like 87 255 IPR029000 -
Pumo5g03539 259 CDD cyclophilin_ABH_like 95 253 - -
Pumo5g03539 259 Gene3D - 83 258 IPR029000 -
Pumo5g03539 259 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 98 253 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03539 Pumo-Chr5 84699382 84701755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03539 108 252 U-box Gene Family AT5G67530 44.521 5.71e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03539 K03768 - gmx:100785805 497.664