Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03535 ATGGGAAGGCACTCTTGCTGTTACAAACAGAAACTTAGGAAGGGTCTTTGGTCACCAGAGGAGGATGAAAAACTTCAGAGGCATATTACTAAGTATGGTCATGGATGTTGGAGCTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGCGGCAAGAGCTGCAGGCTTAGGTGGATCAATTACTTGAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGATGAAGAAAATCTCATCATTGAACTTCATGCAGTGCTAGGGAACAGATGGTCTCAAATTGCAGCACAATTGCCAGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTAAAGAAGAAACTGAGGCAAAGAGGAATAGACCCTGTGACACATAAGCCACTGTCAGAGGCTGAGAATGGGGAGGAGGACAAAACAAGGAGCCAAGAATTATCCAATGAATTGAACCTCCTGAATTCAGAGAGCTTCAAGTCAGATGAAGGGTCCTATGAGCAGAGAGCATCTTCAATTGCCCCCAAAGCCTATGAGATGGAAGGTTCTTGCAGCTCCAAGATAAACACCAAAAACGACACCAACTTGATAGCCAACTGTTCCAACAAAGACATGTTCCTAGACAGCTACACCACTAGTTGCCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATCACTGACACTCTCCCAACCAATTCAAACTCTTGCCATTGGTTCGGCCCAACAACTGCAAGACCCTTTGATATGAACTCTGAGTTTTCTTCCAATGTTATGTCCTTTCTTCCACCTACAACAACCTCATTTCTCCCTACTACTTCTTTTTGCTACAAGCCATCACTAGCTGTCCCTTCAGAAGATATTTCATCAGCCTCTTTTGCTTTGAATGGACCTAATTACTGGGAAGCCAGTGCCTCCAACAACAGCAATGGAAGCAACACAAGCGATGGCGACAGAGAGTTGACAAGTAGCAAGAACAGTGTGCTCTCTTCTTGGGGATTGACAGAAGAAGCCAAGTGGTCTGAGTACCTCCACAACCCAATGTTAATTCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACACATTTGGTACCTGATAACACTTTAGGGGCCATATTGCCTGATTCCAAGGAGCAACAGCAACAACAACAACAGTCCCAAACTTCTAGCATCTTTTCCAAGGACATCCAGAAGCTAACAGCAGCCTTTGGACATATATAG 1230 0.4463 MGRHSCCYKQKLRKGLWSPEEDEKLQRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEAENGEEDKTRSQELSNELNLLNSESFKSDEGSYEQRASSIAPKAYEMEGSCSSKINTKNDTNLIANCSNKDMFLDSYTTSCQPSDLMGNYPLQITDTLPTNSNSCHWFGPTTARPFDMNSEFSSNVMSFLPPTTTSFLPTTSFCYKPSLAVPSEDISSASFALNGPNYWEASASNNSNGSNTSDGDRELTSSKNSVLSSWGLTEEAKWSEYLHNPMLILAAPESLCNQIRPATHLVPDNTLGAILPDSKEQQQQQQQSQTSSIFSKDIQKLTAAFGHI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03535 409 Gene3D - 11 67 - -
Pumo5g03535 409 SMART sant 66 114 IPR001005 -
Pumo5g03535 409 SMART sant 13 63 IPR001005 -
Pumo5g03535 409 MobiDBLite consensus disorder prediction 122 144 - -
Pumo5g03535 409 FunFam MYB transcription factor 68 140 - -
Pumo5g03535 409 PANTHER MYB DOMAIN PROTEIN 55 1 351 - -
Pumo5g03535 409 CDD SANT 17 61 IPR001005 -
Pumo5g03535 409 Gene3D - 69 146 - -
Pumo5g03535 409 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pumo5g03535 409 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo5g03535 409 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo5g03535 409 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g03535 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo5g03535 409 CDD SANT 69 109 IPR001005 -
Pumo5g03535 409 MobiDBLite consensus disorder prediction 122 145 - -
Pumo5g03535 409 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo5g03535 409 FunFam Myb transcription factor 11 67 - -
Pumo5g03535 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03535 Pumo-Chr5 84630198 84632241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03535 1 156 MYB Transcription Factor Family AT4G01680 85.256 4.09e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g03535 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03535 K09422 - gmx:100037467 722.62