Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03533 ATGAACACTCTGAAGCTGTTGGTCATAACAGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAACTACGTTGTGACCAAACTTCAAGCTCAGAAGCACTTAGAGCCAAGGCAAAAGCTTATAACTAATAATAATACTAACATGTGGCATGAACCGTTGCTAGCATCTTCTTCCGTGTGCTCGCTTGGAGCCTCCAACGACCCAAACCTTGGTTTCAGGAAACACGAGGACACTGATGACTCAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGAAATGCTGAGGTTCACAACTTGTCTGAAAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGTAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATAGACTATCTCAAGACTCTAAAGCTTCAGTTACAGATTATGTCAATGGGAAGTGGGTTATGGCCCCTTATGATGCTACCAGCAGCCGCGGCGCATAACATGAATGGACCACATTTGCCTCAGCTAGTGGGAGCTGGAATGGGATTCAGGCCACCACAGCTCCCTATTCCACCACTTTCTGCTATGACAGACAACAGACTTCAAATGTTTGGTTTCCCAAACCAAATGCCACCCATGCCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAACCACACTTGGCTACTGCTACCACCACAGCAGCAACCACCAACTTGGCAGAACATTTTGCTAATTCTGCTGCATCTCTAAAGGTCTCACTCCCCAACAACATCATGGACCTTCATGAAAATGCAACAAAGCTAGCACCAAGTCAGGTTTCCTTTCAACACCACAGCACTAGTACTACTCCTCCACCAGCTAACCCTTTCATTTTTCCACAGAAATAG 954 0.4476 MNTLKLLVITVVFLEFTDPKVNYVVTKLQAQKHLEPRQKLITNNNTNMWHEPLLASSSVCSLGASNDPNLGFRKHEDTDDSTYLSDNDGEPEDMVKQDREGNRVKRSRNAEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLWPLMMLPAAAAHNMNGPHLPQLVGAGMGFRPPQLPIPPLSAMTDNRLQMFGFPNQMPPMPMPHAPFFPIIGNSATQPHLATATTTAATTNLAEHFANSAASLKVSLPNNIMDLHENATKLAPSQVSFQHHSTSTTPPPANPFIFPQK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03533 317 MobiDBLite consensus disorder prediction 296 317 - -
Pumo5g03533 317 PANTHER TRANSCRIPTION FACTOR PIF3 38 271 IPR044273 GO:0003700|GO:0006355
Pumo5g03533 317 SMART finulus 114 163 IPR011598 GO:0046983
Pumo5g03533 317 FunFam Basic helix-loop-helix transcription factor 103 166 - -
Pumo5g03533 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 157 IPR011598 GO:0046983
Pumo5g03533 317 MobiDBLite consensus disorder prediction 70 117 - -
Pumo5g03533 317 MobiDBLite consensus disorder prediction 89 117 - -
Pumo5g03533 317 CDD bHLH_AtPIF_like 108 170 IPR047265 -
Pumo5g03533 317 Pfam Helix-loop-helix DNA-binding domain 112 157 IPR011598 GO:0046983
Pumo5g03533 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 172 IPR036638 GO:0046983
Pumo5g03533 317 Gene3D - 104 165 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03533 Pumo-Chr5 84584242 84585838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03533 51 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 50.350 1.33e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g03533 HLH 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03533 K12126 - gmx:100784724 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03533 5 84584242 84585838 Pumo3g02108 3 32778245 32780565 PCT