Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03531 ATGCGCACAACTTCTCTTCATAACCTTAAGGTGGCGGCTTGGTGTGTCATCATCATCATCTTGTTCATTCCACTATGGGCAAACCCGCAAGTTCCTCCTCTTCCTCTATTAGCAGCAGCAGCAACCGTCACCTCCTCATTTCAACCTGCTTCCTCTCTCACACAAGAACTTCCCACTGATCTTAGGCTTGGACTTGGCATTTCTGCCACTCAACATGTTGGCTCTTCTATTTCAAGGGGGCAATGGCAACAACCACACCACCCTCATGTGAGCACTTCACAAGCTGCTCATGAAGTGAATGATTGCAACGATCATAGCAGCTTCTTCGTGAAGGTCTACATGGAAGGGATTCCAATCGGAAGGAAGCTCAATATACTAGCTCATGGAGGCTACTACGAGTTAGTCAGGACTCTTGAACACATGTTTGACACTACCATTCTTTGGGGGACAGAGATGAATGGAGTGCAACCAGAGAGATGCCATGTGCTAACTTACGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCGACGGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTTGGGTGTTAA 603 0.4677 MRTTSLHNLKVAAWCVIIIILFIPLWANPQVPPLPLLAAAATVTSSFQPASSLTQELPTDLRLGLGISATQHVGSSISRGQWQQPHHPHVSTSQAAHEVNDCNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03531 200 Gene3D - 101 199 - -
Pumo5g03531 200 Pfam AUX/IAA family 94 194 IPR033389 -
Pumo5g03531 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 96 195 IPR003311 GO:0005634|GO:0006355
Pumo5g03531 200 SUPERFAMILY CAD & PB1 domains 102 192 - -
Pumo5g03531 200 ProSiteProfiles PB1 domain profile. 107 197 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03531 Pumo-Chr5 84562041 84564429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03531 110 192 B3 DNA Binding Superfamily AT4G23980 38.554 6.77e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo5g03531 AUX_IAA 7.1e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03531 K14484 - gmx:100818376 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03531 5 84562041 84564429 Pumo3g02111 3 32803023 32804470 PCT