Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03529 ATGGATCACACAGATCCTCCCATCAAAGAAATGGATTTCTTCTCATCAGATAATAATACCAACGCTGATCATCAGAAGCAGCAGCAGCAACAGAATCATGATGATCAAGATCACACTCATCGCCCTGGAAGCATGATCAATGATGGATCACCAACACATATTGTAACTGATCACCATGTAAATACCGGACTGAATTTAACTTGTGCAAGTGATGGAGTGACAGAAGCGGAAAATGGTGAAAATCCTGAAACTGAGCTGAGTTCTCTTGAAAGTCAATTGTGGAGACTACAAGAAGAGAATCGCAAGTTGAGAACTGTGCTGGACCAGATTACTAAAAGCTATACCCAACTACAAGCTCAGCTGTTCATCGCTTTGCAGAAACAAAAACTTCCTCAGAATGGGATGGTGTCGGGACAAAAAATTGTGGACCCAGGGTCATGCACCAAGTTAGACGTCGTGAATGAAGCATCGGTTTCAGATGAAAAGACTGATCAAGATGTGTCGGTTTCTCGTTCAAACAACGCGGAAGTAATGTCAAAGATACATGATGACCCTCAATTGACTAAACTCAATCTTGGGAAGCAGGCTTGTCCTCATGCTGCAGATGATGTTCTTGACCGGTCCTCCTCACAGAGCTGGGGCTCGTCCAAGTTAGAAGAACAGCCCAAAACTACTGCAGAACAAGTTCCTGCAGATCAGATTCCCCTCAGAAAAGCCAGGGTCTCTGTACGTGCTAGATCAGAAGCTCCCCTGATTAGCGATGGATGTCAGTGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGCACTATGGCTGTAGGATGCCCAGTCCGCAAACAGGTTCAAAGATGTGCAGATGACAAAACAGTGTTGATAACAACCTACGAAGGCAATCACAACCACCCTCTGCCACCAGCCGCGACTGCGATGGCAAACACCACATCAGCAGCTGCAGCCATGCTGCTATCAGGTTCAGCAGCAGCAAGCAAGGAAGCGCTAACAAACTCTGCAGGATATTACTCTTCAATTCCCTGTGCTTCAATGGCAACCCTATCAGCTTCAGCTCCATTCCCAACCATCACTCTCGACTTGACCCAAAACCCCAACGGCGCCATGCAGCTGCACCGAGTACCAGGCCATGCCGCCACGTTCTCTCTGCCACTGCATGCAGCATCTGGTGGTCCCCACCTACTAGGGCACCCCTTGTTCTTCCAAGTCCAACAGAAGCTTCTTCCACCGGCAGCAGCGTTGCCTCTAATTCAACGACAACCTTCGTCTATGGTCGAAACGGTGAGTGCAGCCATTGCTTCGGATCCAAACTTCACTGCAGCTTTGGCAGCAGCCATCTCATCAATCATTGGAGTACCAAGAGGAGGCACTGACAATGTCAATGGAAGTGGTGCTATTCCAGGCTCACCGCAGCTTCCTCAATTAAAAGTCACCTCTGATTCTGATTCTGAATGCATGAGTACTCTATAA 1506 0.4781 MDHTDPPIKEMDFFSSDNNTNADHQKQQQQQNHDDQDHTHRPGSMINDGSPTHIVTDHHVNTGLNLTCASDGVTEAENGENPETELSSLESQLWRLQEENRKLRTVLDQITKSYTQLQAQLFIALQKQKLPQNGMVSGQKIVDPGSCTKLDVVNEASVSDEKTDQDVSVSRSNNAEVMSKIHDDPQLTKLNLGKQACPHAADDVLDRSSSQSWGSSKLEEQPKTTAEQVPADQIPLRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCADDKTVLITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSAAASKEALTNSAGYYSSIPCASMATLSASAPFPTITLDLTQNPNGAMQLHRVPGHAATFSLPLHAASGGPHLLGHPLFFQVQQKLLPPAAALPLIQRQPSSMVETVSAAIASDPNFTAALAAAISSIIGVPRGGTDNVNGSGAIPGSPQLPQLKVTSDSDSECMSTL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03529 501 MobiDBLite consensus disorder prediction 205 228 - -
Pumo5g03529 501 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 76 467 IPR044810 GO:0003700
Pumo5g03529 501 MobiDBLite consensus disorder prediction 472 501 - -
Pumo5g03529 501 MobiDBLite consensus disorder prediction 13 27 - -
Pumo5g03529 501 ProSiteProfiles WRKY domain profile. 247 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03529 501 Pfam WRKY DNA -binding domain 254 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03529 501 SUPERFAMILY WRKY DNA-binding domain 245 313 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03529 501 Gene3D WRKY domain 237 314 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03529 501 Coils Coil 86 120 - -
Pumo5g03529 501 MobiDBLite consensus disorder prediction 43 57 - -
Pumo5g03529 501 FunFam probable WRKY transcription factor 31 237 314 - -
Pumo5g03529 501 MobiDBLite consensus disorder prediction 474 501 - -
Pumo5g03529 501 SMART WRKY_cls 252 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03529 501 MobiDBLite consensus disorder prediction 1 57 - -
Pumo5g03529 501 MobiDBLite consensus disorder prediction 28 42 - -
Pumo5g03529 501 MobiDBLite consensus disorder prediction 203 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03529 Pumo-Chr5 84531285 84534818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03529 71 462 WRKY Transcription Factor Family AT4G04450 44.028 1.50e-87 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g03529 WRKY 4.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03529 - - gmx:100783661 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03529 5 84531285 84534818 Pumo3g02113 3 32831555 32837598 PCT