Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03525 ATGGTAGAGAAGGACCATATCAACAATGCAGACTTATCATCAGCAAAAAGCATTAGTATTCCATGCATGGAAAAAATACCACCATATACATCTTGGATGTCCCAGATGTTCAATGCAATTTTCATCATAAGCAAAAATTACATGCTTCTTGAACTAAATGAAAGAATGGCTAAGGATCAATCAGTTCTTGGAAAATACCAAATGTATTATGATCAAAATAGAGGTGAAATGATGATATGCAGTGACAATGAGGAAGAGATATGGGTTATTGATGCTTGTCGCCTAGGAGACAAGTTAAAGTTTGCAAACCATTCATCAAAACCTAATTGCTATGCAAAGGTGATGCTTGTTGGAGGAGATCATCGAGTTGGCATATTTTCGAAGGAAAACATTGAAGCCGGTGATGAGATTTTTTATGATTATTGGTATGATCTAGATTGTGCACCACAATGGGCTCTTCCACCTGACGAGGCTTCCAAGAAAGATGAATTAGTTGTTTCTCAGGGTAGGGCAAAGAAAAATCAATCTCATTGA 534 0.3689 MVEKDHINNADLSSAKSISIPCMEKIPPYTSWMSQMFNAIFIISKNYMLLELNERMAKDQSVLGKYQMYYDQNRGEMMICSDNEEEIWVIDACRLGDKLKFANHSSKPNCYAKVMLVGGDHRVGIFSKENIEAGDEIFYDYWYDLDCAPQWALPPDEASKKDELVVSQGRAKKNQSH 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03525 177 ProSiteProfiles SET domain profile. 10 142 IPR001214 GO:0005515
Pumo5g03525 177 Gene3D SET domain 49 147 IPR046341 -
Pumo5g03525 177 SUPERFAMILY SET domain 52 145 IPR046341 -
Pumo5g03525 177 SMART set_7 21 148 IPR001214 GO:0005515
Pumo5g03525 177 Pfam SET domain 86 141 IPR001214 GO:0005515
Pumo5g03525 177 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 14 86 IPR045318 GO:0006338|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03525 Pumo-Chr5 84472408 84479969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03525 43 146 EF-hand Containing Proteins AT5G13960 29.464 6.97e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo5g03525 SET 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03525 - K11430 gmx:106798111 189.119