Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03523 ATGTCTGATATGATGAGGCGTGAGAATGGTTTGCATGATGAAGAGCTTAAACATGATGAGAGAACAGCACCAGAGAGCAGCACAAACGGGGAAAAGAGTAAACAAAAAGAAAAGGCTGAAACAGTTCCTTATCACAGGCTGTTCTTATTTGCTGACTCCACTGACATCATTTTGATGGTTGTTGGCATCATTGGGGCCATTGGAAATGGCCTTGGGATGCCTCTCATGACATTGCTGTTTGGGGAACTGATTGATAGCTTTGGCAATAACCAATTTGGCTCCGACGTTGTCAAACAAGTTTCCAAGGTCTGTCTGAAATTTGTATACTTAGGAATAGGCACTGGTTTAGCTGCTTTCCTCCAGGTGACTTGCTGGATGGTCACAGGGGAAAGACAGGCTGCAAGAATAAGGGGCTTGTATTTGAAAACTATACTAAGACAGGATATTGCTTTCTTTGATAAGGAAACTAACACTGGAGAGGTGATAGGGCGGATGTCAGGTGACACTGTTCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAGATTTCTGCAGCTAATAGCAACATTCTTTGGGGGCTTTGTGATAGCATTTATCAAAGGGTGGCTTCTAACTGTTGTCATGTTATCCGTTGTTCCACTTGTTGCTGCTGCTGGCGCTGCTATGGCCTTTATCATAGGAATGATGGCAACCCGAGGTCAAAGCGCGTATGCGAAAGCTTCACATGTAGTTGAAGAGACAATAGGTTCAATAAGAACTGTTGCATCCTTTACGGGGGAAAAGCAAGCAGTGTCTAGTTACAAGAAATTTCTTGCAGATGCTTATAAATCAGGAGTTCATGAAGGTTTCGTTGGTGGAATGGGTCTTGGCATAGTTATGTTAGTTATGTTCTGTGGTTATGCGTTGTCTGTATGGTTTGGCGCAAAGATGATAATGGAAAAAGGATATAGTGCAGGAGCGGTGGTCAATGTGTTTGTTGCTGTGTTAAATGCTTCCATGTCTCTTGGCCAGGCATCTCCTTCCATGAGTGCTTTTGCTGCAGGTCAGGCAGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCAGAGATAGATGCTTATGACCCAAATGGAAAAAAACTAGAGGATATTCATGGTGAAATCCATTTAAGGGATGTTTATTTCAGTTATCCAGCCAGACCTGAGGAGTTGATATTCAATGGATTCTCTCTTCATATACCTAGCGGCACCACTGCAGCTTTAGTAGGACAAAGTGGAAGTGGGAAGTCTACAGTGATCAGTTTAATCGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCACTAATGTGAAAGAATTTCAGCTTAGATGGATCAGAGGAAAAATTGGCCTTGTCAGCCAGGAGCCAGTGTTGTTTGCATCTAGCATTAAGGATAATATTGCATATGGAAAAGACGGAGCAACAGTTGAAGAGATAAGAGCTGCAGCAGAACTTGCAAATGCTGCTAAATTCATTGACAAACTGCCACAGGGATTGGACACAATGGTTGGTGAGCATGGAACTCAATTATCTGGTGGACAGAAGCAGCGCATTGCCATTGCAAGAGCAATCCTGAAAGATCCAAGAATTCTACTTCTAGATGAAGCAACAAGTGCACTCGACGCAGAGTCGGAGAGAATAGTACAAGAAGCTCTAGACAGGATCATGGTCAACAGAACTACTGTGGTTGTCGCACATCGCCTGAGCACAGTGAGAAATGCTGATATGATCGCTGTAATTCATGGGGGGAAAATGGTTGAGAAAGGAACACACGTAGAATTAACCAAGGATCCTGAGGGAGCTTACTCTCGACTTATACATTTACAAGAAGGAAACAAGGAATCAGAAGAATCAAGAGACAATCAAAACAAGAGGGAACTTTCCTCAGAATCCTTTACAAAGTTGAGTCAAAGGCGGTCACTTCGAAGATCTGGATCATCTTTGGGGAACAGTAGCCGCCACTCTTTTTCAGTTCCATTTGGTTTACCTACAGGAGTTAACATCCCTGATCCTGAACTTGAATACTCACAGCCTCAAGAAGAATCACCAGAAGTTCCACTCCGGCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTGCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGTACCATATTTCCAATATTTGGTGTGCTGCTCTCCAGTGTTATCAAAACATTTTTTAAACCGTTTCCTGAGATGAAAAAGGATTCCAAGTTTTGGGCACTAATGTTTGTGACCCTTGGATTTGGATCTTTACTGGCAATTCCAGCCCGAAGTTATTTTTTCTCTATGGCTGGCAGTAAGTTAATCCGACGAATCAGGCTCATTTGTTTTGAGAAGGTGATCAACATGGAGGTTGGTTGGTTTGATGAGCCTGAGCACTCTAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCTGTGCGTGCCCTTGTTGGTGATGCTTTAGGACTATTGGTTCAAAATATAGCAACAGCATTGACAGGTTTGATTATTGCCTTTGTTGCGAGCTGGCAGCTGGCATTTATTCTTCTTGTCTTGGTTCCCCTCATTGGAATGAATGGTTATATTCAAATGAAATTCATGAAGGGATCCAATGCAGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCTGAGGAGAAAGTTATGGAACTATACAGGAAGAAATGTGAAGGTCCCATGCAAGAAGGGATACGACAAGGCTTGATAAGTGGAACAGGATTTGGGGTTTCATTTTTCTTGCTCTTCAGTGTCTATGCAACCAATTTCTATGCTGGAGCCAGATTTGTGGAAGCTGGCAAGGCATCATTCACAGATGTTTTTAGGGTTTTCTTTGCTTTAACTATGGCATCTGTTGGAATTTCCCAATCAAGCTCCCTTGCTCCTGATTCTAACAAAGCCAAGATAGCCACTGCTTCCATATTTAGAATAATTGATAGGAAATCGAAGATAGATCCAAGTGATGAGTCTGGTAACACACTGGATAGTGTAAAAGGAGAAATACAGATTCGTCATGTAAGCTTTAAGTATCCATCTAGGCCAGATATACAAATTTTTCGAGACTTAAGCTTGACTATCCATTCAGGCAAGACTGTGGCCCTTGTTGGTGAAAGTGGGAGTGGGAAATCCACAGTGATTGCCTTGTTACAGAGATTTTATGAACCCGATTCTGGTCAAATCACACTTGATGGGATAGAAATTCAGAATTTAAAACTCAAGTGGTTGAGGCAGCAGATGGGACTTGTAAGCCAAGAGCCAGTGCTGTTCAATGACACCATCCGTGCCAATATTGCATATGGAAAGGAAGGCAATGCAACTGAAACAGAAATCATAACTGCAGCAAAACTAGCCAATGCACATGGGTTTATTAGTGGCTTACAACAGGGATATGATACAGTAGTGGGAGAAAGGGGAATCCAACTATCTGGTGGACAAAAGCAACGGGTGGCCATTGCACGTGCTATAATTAAAAGTCCAAAGATATTGCTACTGGATGAGGCCACAAGTGCACTAGATGCTGAGTCAGAGAGAGTTGTTCAAGATGCCTTAGACAAAGTGATGGTGAGAAGGACCACTGTGGTGGTGGCTCATCGTTTATCTACAATAAAAAATGCAGATGTGATTGCAGTGGTAAAAAATGGAGTTATAGTTGAGAAAGGAAGGCATGAGACACTCATTAACATCAAGGATGGATTTTATGCTTCCTTGGTCCAACTTCACACAAGTGCTACAACAGCATGA 3840 0.4266 MSDMMRRENGLHDEELKHDERTAPESSTNGEKSKQKEKAETVPYHRLFLFADSTDIILMVVGIIGAIGNGLGMPLMTLLFGELIDSFGNNQFGSDVVKQVSKVCLKFVYLGIGTGLAAFLQVTCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGRFLQLIATFFGGFVIAFIKGWLLTVVMLSVVPLVAAAGAAMAFIIGMMATRGQSAYAKASHVVEETIGSIRTVASFTGEKQAVSSYKKFLADAYKSGVHEGFVGGMGLGIVMLVMFCGYALSVWFGAKMIMEKGYSAGAVVNVFVAVLNASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKKLEDIHGEIHLRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGTNVKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATVEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHGGKMVEKGTHVELTKDPEGAYSRLIHLQEGNKESEESRDNQNKRELSSESFTKLSQRRSLRRSGSSLGNSSRHSFSVPFGLPTGVNIPDPELEYSQPQEESPEVPLRRLASLNKPEIPVLLIGCVAAIANGTIFPIFGVLLSSVIKTFFKPFPEMKKDSKFWALMFVTLGFGSLLAIPARSYFFSMAGSKLIRRIRLICFEKVINMEVGWFDEPEHSSGAIGARLSADAASVRALVGDALGLLVQNIATALTGLIIAFVASWQLAFILLVLVPLIGMNGYIQMKFMKGSNADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMQEGIRQGLISGTGFGVSFFLLFSVYATNFYAGARFVEAGKASFTDVFRVFFALTMASVGISQSSSLAPDSNKAKIATASIFRIIDRKSKIDPSDESGNTLDSVKGEIQIRHVSFKYPSRPDIQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYEPDSGQITLDGIEIQNLKLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGNATETEIITAAKLANAHGFISGLQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVRRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINIKDGFYASLVQLHTSATTA 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03523 1279 SUPERFAMILY ABC transporter transmembrane region 694 1018 IPR036640 GO:0005524|GO:0016020
Pumo5g03523 1279 CDD ABC_6TM_Pgp_ABCB1_D2_like 702 1017 - -
Pumo5g03523 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 713 999 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g03523 1279 CDD ABC_MTABC3_MDL1_MDL2 1034 1272 - -
Pumo5g03523 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 620 IPR027417 -
Pumo5g03523 1279 CDD ABC_MTABC3_MDL1_MDL2 382 620 - -
Pumo5g03523 1279 FunFam ABC transporter B family member 9 1001 1023 - -
Pumo5g03523 1279 MobiDBLite consensus disorder prediction 620 667 - -
Pumo5g03523 1279 Gene3D ABC transporter type 1, transmembrane domain 104 1008 IPR036640 GO:0005524|GO:0016020
Pumo5g03523 1279 CDD ABC_6TM_Pgp_ABCB1_D1_like 59 343 - -
Pumo5g03523 1279 MobiDBLite consensus disorder prediction 1 38 - -
Pumo5g03523 1279 Pfam ABC transporter transmembrane region 712 984 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g03523 1279 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g03523 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 618 IPR003439 GO:0005524
Pumo5g03523 1279 MobiDBLite consensus disorder prediction 620 638 - -
Pumo5g03523 1279 SMART AAA_5 409 581 IPR003593 GO:0016887
Pumo5g03523 1279 SMART AAA_5 1061 1254 IPR003593 GO:0016887
Pumo5g03523 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 60 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g03523 1279 MobiDBLite consensus disorder prediction 639 667 - -
Pumo5g03523 1279 FunFam ABC transporter B family member 9 46 379 - -
Pumo5g03523 1279 SUPERFAMILY ABC transporter transmembrane region 45 366 IPR036640 GO:0005524|GO:0016020
Pumo5g03523 1279 ProSitePatterns ABC transporters family signature. 521 535 IPR017871 GO:0005524|GO:0016887
Pumo5g03523 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1272 IPR027417 -
Pumo5g03523 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1034 1271 IPR003439 GO:0005524
Pumo5g03523 1279 FunFam ABC transporter B family member 1 1024 1274 - -
Pumo5g03523 1279 PANTHER ABC TRANSPORTER B FAMILY 23 621 IPR039421 -
Pumo5g03523 1279 Pfam ABC transporter 401 549 IPR003439 GO:0005524
Pumo5g03523 1279 Gene3D - 1024 1278 IPR027417 -
Pumo5g03523 1279 FunFam ABC transporter B family member 1 692 1000 - -
Pumo5g03523 1279 Gene3D - 380 637 IPR027417 -
Pumo5g03523 1279 FunFam ABC transporter B family member 1 372 621 - -
Pumo5g03523 1279 ProSitePatterns ABC transporters family signature. 1174 1188 IPR017871 GO:0005524|GO:0016887
Pumo5g03523 1279 Pfam ABC transporter 1053 1202 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03523 Pumo-Chr5 84457323 84462997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03523 16 1273 Calmodulin-binding Proteins AT2G36910 43.656 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03523 K05658 - gmx:100802547 2312.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03523 5 84457323 84462997 Pumo3g02122 3 32925093 32931109 PCT