Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03516 ATGGCGGGAAAGATAATTATCTCGGCTGTTTCTCTCATCCTGGTGGTGGGCGTCGCCATCGGCGTCGTGGTGGCCGGTCAACAAGAAGGGCGACGATCCATCACTCCAATCTCACCAAAAATCCGTAGGGGCCACCATGGAGAGCGTCATCAAGGCCTTCAACATGAGCGACAGGCTCACCACCGAGTACGGAGGCAACAACAACGGCACCAAGATGGCCCTGGACGATTGCAAGGACCTGTTGCAATCCGCCATAGGACAGCCTCCAGCTCAGCGTGGACATGGTTCACAACAACAACGTCCAAGCCGTGCATAACCAGCAGGCCTGACTTCAAGAACTGGCTCAGCGCTGTTATCTCCTACCAACAGGCTTGCATGGAGGGCTTTGACGATGGCAATGACGGTGAGAAGAAGATAAAGGAGCAGTTGCACACCCAGAGCTTGGACCACGTTCAGAAACTCACTGGAATCACCCTCGACATCGTGAGTGGTTTGTCCCACATCCTCGAGCAGTTCGGGTTGAAGTTCGACCTTAAACCCGCATCTCGCCGCCTTCTCAGCAAGGACGGGTTACCCACCTGGTTCTCTGCTGCTGACCGTAAGCTCTTGGCCCGTGGATGGAGAGCACACATCAAGCCCAATGTCGTGGTTGCCAAGGATGGCTCTGGTCAGTTCAAAACCGTTGCCGACGCTATTGCTTCCTACCCTAACAACAACCAGGGTAGATACATTATCTACGTTAAGGCTGGTGTCTATGACGAGTACATCACTGTCCCCAAGAGTGCAAAGAATATCCTCATGTATGGTGATGGCCCCGCAAAGACCATCATCACCGGTAACAAGAACTTCGTCGCTGGCGTCAAGACAATGCAAACTGCCACTTTCGCCAACACTGCTGATGGGTTCATTGCCAAGGCAATGACATTCCAGAACACAGCCGGTGCTGAGGGTCACCAAGCCGTTGCATTCAGGAACCAAGGAGACATGTCAGCTCTCGTTGGCTGCCACATTTTGGGTTACCAAGACACCTTGTACGTGCAAACCAACAGGCAATTCTACCGCAACTGCGTCATCTCCGGCACCGTCGACTTCATCTTTGGCACCTCCGCCACCGTGATCCAGCACTCCGTGATCATCGCGAGGAAGCCCCTGGACAACCAGTTCAACACAGTCACCGCCGACGGCACATCCCAGAAGAACATGGCCACAGGAATCATCCTCCAGGGCTGCAACATCGTCCCAGAAGCCGAACTCTTCCCCATCAGGTTCCAAGTGAAGTCATACTTGGGCAGGCCATGGAAGCAGTTCTCAAGGACCGTGGTCATGGAATCCTCCGTCGGTGACTTCCTTCACCCCGAAGGATGGTGCCCCTGGGCCGGTGAACACTTCGAAGATACCTTGTACTATGCTGAGTACAACAACGATGGACCTGGTGCCAACGTTAACGGAAGGATCAAGTGGAAGGGTTACCGTGGTCTCATTAGCCGCGAAGAAGCCACTCAGTTCACCCCTGCCCAGTTCCTCCAGGCTGGATCCAACGGTGGAACTGATTGGTTGAAGGCTCTCCATGTTCCTCACGCCCTTACCTTCATCAAGGCTTGA 1602 0.5418 MAGKIIISAVSLILVVGVAIGVVVAGQQEGRRSITPISPKIRRGHHGERHQGLQHERQAHHRVRRQQQRHQDGPGRLQGPVAIRHRTASSSAWTWFTTTTSKPCITSRPDFKNWLSAVISYQQACMEGFDDGNDGEKKIKEQLHTQSLDHVQKLTGITLDIVSGLSHILEQFGLKFDLKPASRRLLSKDGLPTWFSAADRKLLARGWRAHIKPNVVVAKDGSGQFKTVADAIASYPNNNQGRYIIYVKAGVYDEYITVPKSAKNILMYGDGPAKTIITGNKNFVAGVKTMQTATFANTADGFIAKAMTFQNTAGAEGHQAVAFRNQGDMSALVGCHILGYQDTLYVQTNRQFYRNCVISGTVDFIFGTSATVIQHSVIIARKPLDNQFNTVTADGTSQKNMATGIILQGCNIVPEAELFPIRFQVKSYLGRPWKQFSRTVVMESSVGDFLHPEGWCPWAGEHFEDTLYYAEYNNDGPGANVNGRIKWKGYRGLISREEATQFTPAQFLQAGSNGGTDWLKALHVPHALTFIKA 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03516 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 109 165 IPR035513 -
Pumo5g03516 533 ProSitePatterns Pectinesterase signature 2. 358 367 IPR033131 -
Pumo5g03516 533 MobiDBLite consensus disorder prediction 37 79 - -
Pumo5g03516 533 FunFam Pectinesterase 208 530 - -
Pumo5g03516 533 Pfam Plant invertase/pectin methylesterase inhibitor 110 161 IPR006501 GO:0004857
Pumo5g03516 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 94 166 IPR035513 -
Pumo5g03516 533 SUPERFAMILY Pectin lyase-like 210 524 IPR011050 -
Pumo5g03516 533 Gene3D - 208 529 IPR012334 -
Pumo5g03516 533 ProSitePatterns Pectinesterase signature 1. 239 258 IPR018040 -
Pumo5g03516 533 PANTHER PECTINESTERASE 107 520 - -
Pumo5g03516 533 Pfam Pectinesterase 214 510 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03516 Pumo-Chr5 84388010 84389829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03516 109 533 Carbohydrate Esterase AT2G26450 45.540 3.47e-127 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03516 K01051 - gmx:100781507 813.913