Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03514 ATGGGTGGCGATGCAGGCGCAATGAACTCCACGGCCAAGATTTCGGTGTGGTGGGACATTGACAACTGTCGTGTCCCTTGGGGCCACGACGCCAACTCCATCGCTCAGAACATTACCTCCGCCCTCGTCAACATCAACTACGGCGGCCCCGTCTCCATCTCCGCCTACGGCGACACCACCCGCATCCCCCCGCCCGTCCAACACGCCCTCTCCAGCACCGGCGTTGCCCTCAACCACGTCCCCACCGGTGCGAAAGATGCTAGTGACAAGAAGATTCTAGTGGATATGCTGCTATGGGCCGTAGACAATCCCGCCCCCGCAAACTACTTGCTCATATCCGGCGACAGAGACTTCTCCAACGCGCTTCACCAACTCGGCATGCGAAAGTACAACATTCTCCTCGCCCACCCGCCGCAAGTCTCTCCCTCCCTCTCCACCGCCGCCAAGGTCGTCTGGCTCTGGACAACCCTCTCCGCCGGCGGCGCCCCTCTCTACATCGCCGACTCCGACTCCTCCTCCGGTAATCCACCCACTCCTCTCCTTGAACCTCTTCAATTGAAACCCAAACTTAAATACATTAGGAAAAGCACCACCGCAAAAACCCCAATTGAGAGTGAGAGTAAGAGTAAGAACAATGATGTTCGTGTTCCTAATCCGGAACCACCACAGAGAAAGTTCTTGATCGGAGCTCCTCATGAATTCTTTCCTAGCAAATGTAACGACCCCCCCGTGATCCCAATCCCAATCCCAATCCCAATCCCAACTAGTTCTAAGTTGAATAAGGAGATTTTAATTCCTCGTCGTGGTGATTTACACCACAACCCTTTGAGGCAAAAGCTAATTGAAATTCCTCGTCTTGCAAATGCTACTACTCATCAAGAAACCAGGGATAATTCTGACTACAATGTGGAGAATCTTATTGATGTTATTATGAGAACCCTGAACATTCTCAAGCGTGAAATGATTGTGCCCAATGAAGCCAATATAACTGATTGCGTTCGTTATGGAGATCCCAAGTATCGGACTATTGATGTCAGGATGGCTTTGGATTTTGCCATAGAGAAGCGTAGGGTAGTGAAACGAGTCTTTGGGGCCATGCATTTATATCTTGGTAGCAATGAGACGCTCTGGAAGTGTGTCAACCATATAAGTGGTCATCCTAGTGATTTTCCACAAAAAACATGGGATAGAGTTAAGCAGTTCCTTACTTCATCATCAGGGACATCGTTGATGTTGATATCGCGTTGCAGATTTGAAGCATCTTTGATTCTAAAGAAATCATGTCTTGGAGAGGTTGTATTAGGGGATGTGCTTAAAATTCTAGAGATGATGATCACAGTCAAGAAATGGATTATACATCATCATAGTGGGTGGCAGCCTATTACCATTACACTTAAGGAGAGTAAAAGTGATGCATACAGTGATTCTGATGTTGATCTAGATCAAATCTGA 1452 0.4828 MGGDAGAMNSTAKISVWWDIDNCRVPWGHDANSIAQNITSALVNINYGGPVSISAYGDTTRIPPPVQHALSSTGVALNHVPTGAKDASDKKILVDMLLWAVDNPAPANYLLISGDRDFSNALHQLGMRKYNILLAHPPQVSPSLSTAAKVVWLWTTLSAGGAPLYIADSDSSSGNPPTPLLEPLQLKPKLKYIRKSTTAKTPIESESKSKNNDVRVPNPEPPQRKFLIGAPHEFFPSKCNDPPVIPIPIPIPIPTSSKLNKEILIPRRGDLHHNPLRQKLIEIPRLANATTHQETRDNSDYNVENLIDVIMRTLNILKREMIVPNEANITDCVRYGDPKYRTIDVRMALDFAIEKRRVVKRVFGAMHLYLGSNETLWKCVNHISGHPSDFPQKTWDRVKQFLTSSSGTSLMLISRCRFEASLILKKSCLGEVVLGDVLKILEMMITVKKWIIHHHSGWQPITITLKESKSDAYSDSDVDLDQI 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03514 483 MobiDBLite consensus disorder prediction 195 223 - -
Pumo5g03514 483 Pfam OST-HTH Associated domain 413 470 IPR025677 -
Pumo5g03514 483 CDD PIN_limkain_b1_N_like 13 137 - -
Pumo5g03514 483 Pfam NYN domain 13 149 IPR021139 GO:0004540
Pumo5g03514 483 PANTHER LIMKAIN B LKAP 10 345 IPR024768 GO:0005777|GO:0010468
Pumo5g03514 483 Gene3D - 6 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03514 Pumo-Chr5 84376867 84378665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03514 12 169 C2H2 Transcription Factor Family AT5G61190 71.519 1.75e-69 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03514 - K17573 gmx:100819329 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03514 5 84376867 84378665 Pumo5g03514 5 84376867 84378665 ECH