Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03488 ATGGATGTTAAGGTGAAGAAAGCAGAGTCCATAGAACAGGTGCAGCACAAGCAAAGTGAAGACCTCAGAAAAGGTCCATGGAGCGTTGAAGAGGACACCATTCTCCAAAACTACGTCGCCACCCACGGCGATGGTAACTGGAATTCCGTCGCACGCTGTGCAGGCCTGAAGAGATCGGGGAAAAGTTGCAGGTTAAGATGGCTAAACTACTTGCGTCCCGATGTTCGTCGCGGAAATATAACACTCCAAGAACAGATAACGATTCTGGACCTCCACTCTCGGTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCGGGTAGAACAGACAACGAAATAAAGAATTATTGGAGGACCCGAGTGATTAAGCAAGCAAGGAATCTCAAGTGTGACGTGGACAGTAAACAGTTCCAAGATGCCTTGCGTTACGTGTGGATGCCCCGTTTGATTGAGCGGATTCAGCCACCACTAATACCATCGGAAAGTTTCGGCCCGGCCCATATCTCTCCCTTGCAACTTGACCCAAACCCAACTTCTCCGGCCCAACAAGAGTTACATGGTTCGGGTTCGGGTTCCACTGCCTTGGACTCATCAAGCGCGGAGTTACAAGCTCCTAATTTAGATTCTGAACATTTGGGTGTATACGACAGTTTCAATGACGACCAAAATTTGGAACAGGGGAATAATAGCATGCTAGCTTTAGGTGGTGGGGACTTGATGGAGAGTTTGTGGGAGGATGAGAATATGTGGCTTATGCGACAACTTTGTGATGATATGGAAATTAAAGACAATTTCCTTGCGTGA 807 0.4783 MDVKVKKAESIEQVQHKQSEDLRKGPWSVEEDTILQNYVATHGDGNWNSVARCAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQARNLKCDVDSKQFQDALRYVWMPRLIERIQPPLIPSESFGPAHISPLQLDPNPTSPAQQELHGSGSGSTALDSSSAELQAPNLDSEHLGVYDSFNDDQNLEQGNNSMLALGGGDLMESLWEDENMWLMRQLCDDMEIKDNFLA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03488 268 Gene3D - 25 76 - -
Pumo5g03488 268 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 193 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo5g03488 268 MobiDBLite consensus disorder prediction 165 203 - -
Pumo5g03488 268 Gene3D - 81 122 - -
Pumo5g03488 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Pumo5g03488 268 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Pumo5g03488 268 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Pumo5g03488 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Pumo5g03488 268 CDD SANT 81 120 IPR001005 -
Pumo5g03488 268 FunFam Myb transcription factor 24 76 - -
Pumo5g03488 268 MobiDBLite consensus disorder prediction 1 24 - -
Pumo5g03488 268 SMART sant 23 73 IPR001005 -
Pumo5g03488 268 SMART sant 76 124 IPR001005 -
Pumo5g03488 268 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Pumo5g03488 268 CDD SANT 26 71 IPR001005 -
Pumo5g03488 268 FunFam MYB transcription factor 81 144 - -
Pumo5g03488 268 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Pumo5g03488 268 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Pumo5g03488 268 MobiDBLite consensus disorder prediction 173 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03488 Pumo-Chr5 84166569 84168087 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03488 16 259 MYB Transcription Factor Family AT2G47190 49.805 2.63e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g03488 Myb_DNA-binding 7.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03488 K09422 - gmx:100797220 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03488 5 84166569 84168087 Pumo3g02144 3 33167689 33169293 PCT