Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03486 ATGGAGAGGAGTTTATCAGGAACATATGGAAGTAGTGAAGAGGAGATGATGTCAATAACGAAAGGTCCATGGACAGAGGAAGAGGATTCTGTTCTCTTCAATTACATCACTGTCCACGGCGAAGGTCACTGGAACTCTGTCGCTCGCCACACAGGTCTAAAACGAACGGGCAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGTCCCAACGTTCGACGTGGGAACATAACCCTCGAAGAACAGCTCTTGATTCTTGACCTCCATTCCCGTTGGGGCAACAGGTGGTCGAAAATAGCTGAGCAATTACCGGGGAGAACAGACAACGAGATTAAGAACTATTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTAAAATGTGATGTGAACAGCAAGCAATTCAGAGACACGTTGCGTTTTGTGTGGATGCCACGTATGTTAGAGCGGATCCAGGCTCAAGCATCATCAGGGCAAGCCCAAACCACCTTAATCTCCAACACACACGCACACAGCGACCCTTGTGGAGTCATGACCAACCCGAGTTTGTTGTCAGAGGTGTCATCAGCGGTTGATGTCCACGCGCCTTCTCTCTCTGACTCGAGCGCGTCTAATTACAATTTAATGGGTGGTGGAAGTTGCTCATCATATAGTACTGTAGAGGAAGGTAACAGTAACACCCTATGGCAGCAGAACTATTATAGCTACTCGGACATAGCAGGCAATGGTTTTGGTGGTGCGGACTTATGGACGGATGAAAATATTTGCTTTCTGCAACAGCAGCTGGCTGATCACTTGTGA 801 0.4757 MERSLSGTYGSSEEEMMSITKGPWTEEEDSVLFNYITVHGEGHWNSVARHTGLKRTGKSCRLRWLNYLRPNVRRGNITLEEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSGQAQTTLISNTHAHSDPCGVMTNPSLLSEVSSAVDVHAPSLSDSSASNYNLMGGGSCSSYSTVEEGNSNTLWQQNYYSYSDIAGNGFGGADLWTDENICFLQQQLADHL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03486 266 Gene3D - 78 119 - -
Pumo5g03486 266 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Pumo5g03486 266 Gene3D - 20 73 - -
Pumo5g03486 266 MobiDBLite consensus disorder prediction 1 15 - -
Pumo5g03486 266 MobiDBLite consensus disorder prediction 1 20 - -
Pumo5g03486 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Pumo5g03486 266 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 192 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo5g03486 266 CDD SANT 78 117 IPR001005 -
Pumo5g03486 266 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Pumo5g03486 266 CDD SANT 23 68 IPR001005 -
Pumo5g03486 266 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Pumo5g03486 266 FunFam MYB transcription factor 78 141 - -
Pumo5g03486 266 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Pumo5g03486 266 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Pumo5g03486 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 72 IPR017930 -
Pumo5g03486 266 FunFam Myb transcription factor 21 73 - -
Pumo5g03486 266 SMART sant 73 121 IPR001005 -
Pumo5g03486 266 SMART sant 20 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03486 Pumo-Chr5 84138130 84139779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03486 12 263 MYB Transcription Factor Family AT2G47190 49.231 2.62e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g03486 Myb_DNA-binding 8.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03486 K09422 - gmx:100819467 427.557