Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03484 ATGGATGCGAAGGATATCCTGGGATTGCCCAAAAACTCATTCCCACCTCTCGAGAAGAAGTCTCGACCTCCCAAAGAGTCTCAAAGAAAACCAGATGGCATTTCGCGCGAGGTGTATGCGCTCACCGGTGGATTGGCGCCTCTTATGCCTGCAATTGAGGCCTCTCAATTGAAGAAAAAGCCTCCTCCTCTCGAAAAGATCACTTGGCAGTGGCTTCCTTTCACCAGTTCTGCTCGTAAAGATAATCTTCATCTTTACCATTGGGTACGAGTCGTTAATGGTGTTCCTCCTACGGGGGACTATTCTTTCGCCAAGTATAATAAGTCCGTTGACGTTATCAAATACACAGATGAGGAGTATGACAAGTATTTGACAGATCCTATGTGGACCAAAGAGGAGACAGATCAACTATTTGACTTGTGTGAGAGATTTGATCTCCGATTTATTGTAATAGCTGATAGGTTTCCATCATCTCGGACTGTAGAGGAATTAAAGGATAGATACTATAGTGTTTCCCGGGCTATATTGATTGCTAGGGCTCCATCTTCTGGGGATTTTGCAGCACATCCTATTGTTAAGGAACCATATAATGTTGCACAAGAAATGGAGCGAAAACGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGAAGAGATGAAGAGGTTCTCGTTGAAGCGAAAAGAATAGCTGAAAAACGCCTTCCTCCCAAGGTTGCTGAAGAGTCTCAGTTGGTTGCTTCTAATGCTGGTGCAGAAGCTACAGAGAGGGCTGTTCCTGGTGAAACTGTATCTCCATCAAATGTGCAACTTCCATCAATGGTTGCGCCAGATAACACATCTACTCTAGCTTCTCTTCGCATGCTTCGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCTGCGAACGCATCTGCTGGACTTCGGACTATCAAACGGGTTGAGCAAACTTTGCAAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCAACGAAAGCTGTTTGTGCAGAGCATCTTGAATTAAGAAAAGAAATACTAACTTGGCTTAATCTCCAGAAACAGGTGCAATATAAAGAGGCTGAAGGTTCCTCTTTTCGTGATGGGTCATATGGTGAAACACCTGGCACGCCAAAGCATTTACATCGTGGTGGGGATCAGGATCGGACATTTGTTCCAGATTCAATGAATTTCGGAGTGGAAAGGGTTGGCAAAAAGGACCAAAAGCGCAAGATGGCAACCGGGAAAGGTGTTTCTATTCGTAGAATTCTTTTAATGCTGTGGAAAGTGGCTGTGAACTCAACACCTGGAAATTCTGATTGCGGAATACCAGGTACAAAAAAGGCTTCTTATTTGGATATGCATGTATATAAATTTGGAAATGGGAATTCCAGATGTCTTTGA 1416 0.4379 MDAKDILGLPKNSFPPLEKKSRPPKESQRKPDGISREVYALTGGLAPLMPAIEASQLKKKPPPLEKITWQWLPFTSSARKDNLHLYHWVRVVNGVPPTGDYSFAKYNKSVDVIKYTDEEYDKYLTDPMWTKEETDQLFDLCERFDLRFIVIADRFPSSRTVEELKDRYYSVSRAILIARAPSSGDFAAHPIVKEPYNVAQEMERKRALSMVLSQTRQQERRDEEVLVEAKRIAEKRLPPKVAEESQLVASNAGAEATERAVPGETVSPSNVQLPSMVAPDNTSTLASLRMLRVYLRTYALEQMVQAANASAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKHLHRGGDQDRTFVPDSMNFGVERVGKKDQKRKMATGKGVSIRRILLMLWKVAVNSTPGNSDCGIPGTKKASYLDMHVYKFGNGNSRCL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03484 471 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Pumo5g03484 471 MobiDBLite consensus disorder prediction 251 275 - -
Pumo5g03484 471 FunFam DNA methyltransferase 1-associated protein 1 97 184 - -
Pumo5g03484 471 Gene3D - 98 184 - -
Pumo5g03484 471 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 417 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Pumo5g03484 471 SUPERFAMILY Homeodomain-like 125 174 IPR009057 -
Pumo5g03484 471 CDD SANT_DMAP1_like 129 171 - -
Pumo5g03484 471 MobiDBLite consensus disorder prediction 1 34 - -
Pumo5g03484 471 SMART sant 125 174 IPR001005 -
Pumo5g03484 471 MobiDBLite consensus disorder prediction 18 33 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo5g03484 SANT_DAMP1_like 8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03484 K11324 - gmx:100818926 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03484 5 84116070 84122777 Pumo5g03484 5 84116070 84122777 ECH