Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03477 ATGGAGACTCCGAAGGAGCAGCAAAGGGTCAATTTCAACGGAGACCCTCCAAACCCTCACACTCACGACAATGGCAGCAACGGCTTCAACCACTTCCATCCCACACCCTCCGTTGATTCTGGATATGCTCTTAACCATTCCATTCCTCGCCCTCTCCGCAAACGCCCTTGGCATCACTCCAACAACGGAACTTCTCCAGATCAAGTGGACGGTTCGTGTCACGTGAAAGTGTATGTTGCACCTGTTCCAAGAACGGCCACGGAGGCTGAGATCCGCCTTGTATTTGAAGAACATGGAACCATTGTTGAGATTGTTCTTTTAAAAGATAAGAGAACTGGTACACGGCAAGGTAGTTGTTTTGTAAAATATGCAACATTTGATGAAGCTGACAGGGCTATTAAGGCTTTAAACAATCAATATACATTTGCTGGGGAATCATGTCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTCAACGCCTTGGGTTCTGCCGTAATATGGAAATGAAAGATCCTTTAGAAGAGGTGGCAGATAAAGTTTTTGTTAGTTCCATCAACAAAGAAGCTACAAAAAAGGATATTGAAGAAATATTTTCCCCTTACGGGCATGTTGAAGATATCTTCCTTGTGAGCAATCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAGAACCTTCACGATGAGAGGTTGTGATAATCCATTAATCGTTCGTTTTGCGGATCCTAAGAAACCTAAGACTGGAGAATCAAGGGGCAACTATTTATCTGTGAATGCAAATTTTGGTCCTTGTTCCCAAGAACCAGCAGTATGGGCACTGCCAAATTTTGGTGATTCCAATAGTGGAGGAAGTATTCTGCCTATTGCCCCGTATCATTCCACAATTGCACACCCACAAGTTACTTCTCATATGCAAAACTGGGAACCTGGTGCGACTGTGGTACAACATCCATTTCCTCCCCATCAAGTGCATTCACAGTTGGCTTCAATGCCTTTGGGGTCAATTCAAGCTCCCAAATTGTCTTCTCAGCCATTTATTACTGAGGTGCAAAGACAATCGCATCCAGCAGATTCATCAGTTCAAAATATAGAGCAGCAGCTTAGTTCACAGCTGCCTTCTCAGACCGGAAGCAACCCCAGTACAGTTACTGGCAATACCCCGCCTGATATGCCTACAAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTTATAAGTACTACTACAACTGTGTAACTTGTGAAAGCAGATGGGAGAAGCCTGAGGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCAGGAGCAGGAGGATAATACCTGTAGTCTCTCACAATTGTCGTTATCTTCCTCTCAACTAGTTGATAAAAAACAAAAGGAAACAAATCATGACCACAGGCAGCAGTCAGAAACAAGTCCTGTTGTTGGATAG 1491 0.4386 METPKEQQRVNFNGDPPNPHTHDNGSNGFNHFHPTPSVDSGYALNHSIPRPLRKRPWHHSNNGTSPDQVDGSCHVKVYVAPVPRTATEAEIRLVFEEHGTIVEIVLLKDKRTGTRQGSCFVKYATFDEADRAIKALNNQYTFAGESCPVVVKFADRELQRLGFCRNMEMKDPLEEVADKVFVSSINKEATKKDIEEIFSPYGHVEDIFLVSNRGYAFVKFSNREMALAAIKGLNRTFTMRGCDNPLIVRFADPKKPKTGESRGNYLSVNANFGPCSQEPAVWALPNFGDSNSGGSILPIAPYHSTIAHPQVTSHMQNWEPGATVVQHPFPPHQVHSQLASMPLGSIQAPKLSSQPFITEVQRQSHPADSSVQNIEQQLSSQLPSQTGSNPSTVTGNTPPDMPTSPQDEDFPECDWSEHYCPDGYKYYYNCVTCESRWEKPEEYALYEKESQKQQEQEDNTCSLSQLSLSSSQLVDKKQKETNHDHRQQSETSPVVG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03477 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 156 IPR000504 GO:0003723
Pumo5g03477 496 MobiDBLite consensus disorder prediction 1 69 - -
Pumo5g03477 496 Gene3D - 411 458 - -
Pumo5g03477 496 SUPERFAMILY WW domain 414 446 IPR036020 GO:0005515
Pumo5g03477 496 SMART ww_5 410 442 IPR001202 GO:0005515
Pumo5g03477 496 Gene3D - 65 160 IPR012677 -
Pumo5g03477 496 MobiDBLite consensus disorder prediction 448 496 - -
Pumo5g03477 496 MobiDBLite consensus disorder prediction 1 34 - -
Pumo5g03477 496 CDD WW 413 442 IPR001202 GO:0005515
Pumo5g03477 496 Gene3D - 168 261 IPR012677 -
Pumo5g03477 496 MobiDBLite consensus disorder prediction 357 411 - -
Pumo5g03477 496 Pfam WW domain 413 440 IPR001202 GO:0005515
Pumo5g03477 496 SMART rrm1_1 76 152 IPR000504 GO:0003723
Pumo5g03477 496 SMART rrm1_1 179 249 IPR000504 GO:0003723
Pumo5g03477 496 ProSitePatterns WW/rsp5/WWP domain signature. 415 440 IPR001202 GO:0005515
Pumo5g03477 496 MobiDBLite consensus disorder prediction 456 475 - -
Pumo5g03477 496 FunFam Flowering time control protein FCA isoform A 400 460 - -
Pumo5g03477 496 SUPERFAMILY RNA-binding domain, RBD 179 263 IPR035979 GO:0003676
Pumo5g03477 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 143 IPR000504 GO:0003723
Pumo5g03477 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 238 IPR000504 GO:0003723
Pumo5g03477 496 MobiDBLite consensus disorder prediction 357 403 - -
Pumo5g03477 496 SUPERFAMILY RNA-binding domain, RBD 24 154 IPR035979 GO:0003676
Pumo5g03477 496 PANTHER RNA BINDING PROTEIN 38 448 - -
Pumo5g03477 496 FunFam Flowering time control protein FCA isoform B 60 161 - -
Pumo5g03477 496 ProSiteProfiles WW/rsp5/WWP domain profile. 415 442 IPR001202 GO:0005515
Pumo5g03477 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 253 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03477 Pumo-Chr5 84044205 84053783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03477 77 281 Eukaryotic Initiation Factors Gene Family AT1G49760 26.728 3.82e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03477 K13207 - gmx:100795107 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03477 5 84044205 84053783 Pumo5g03477 5 84044205 84053783 ECH