Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g03477 | ATGGAGACTCCGAAGGAGCAGCAAAGGGTCAATTTCAACGGAGACCCTCCAAACCCTCACACTCACGACAATGGCAGCAACGGCTTCAACCACTTCCATCCCACACCCTCCGTTGATTCTGGATATGCTCTTAACCATTCCATTCCTCGCCCTCTCCGCAAACGCCCTTGGCATCACTCCAACAACGGAACTTCTCCAGATCAAGTGGACGGTTCGTGTCACGTGAAAGTGTATGTTGCACCTGTTCCAAGAACGGCCACGGAGGCTGAGATCCGCCTTGTATTTGAAGAACATGGAACCATTGTTGAGATTGTTCTTTTAAAAGATAAGAGAACTGGTACACGGCAAGGTAGTTGTTTTGTAAAATATGCAACATTTGATGAAGCTGACAGGGCTATTAAGGCTTTAAACAATCAATATACATTTGCTGGGGAATCATGTCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTCAACGCCTTGGGTTCTGCCGTAATATGGAAATGAAAGATCCTTTAGAAGAGGTGGCAGATAAAGTTTTTGTTAGTTCCATCAACAAAGAAGCTACAAAAAAGGATATTGAAGAAATATTTTCCCCTTACGGGCATGTTGAAGATATCTTCCTTGTGAGCAATCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAGAACCTTCACGATGAGAGGTTGTGATAATCCATTAATCGTTCGTTTTGCGGATCCTAAGAAACCTAAGACTGGAGAATCAAGGGGCAACTATTTATCTGTGAATGCAAATTTTGGTCCTTGTTCCCAAGAACCAGCAGTATGGGCACTGCCAAATTTTGGTGATTCCAATAGTGGAGGAAGTATTCTGCCTATTGCCCCGTATCATTCCACAATTGCACACCCACAAGTTACTTCTCATATGCAAAACTGGGAACCTGGTGCGACTGTGGTACAACATCCATTTCCTCCCCATCAAGTGCATTCACAGTTGGCTTCAATGCCTTTGGGGTCAATTCAAGCTCCCAAATTGTCTTCTCAGCCATTTATTACTGAGGTGCAAAGACAATCGCATCCAGCAGATTCATCAGTTCAAAATATAGAGCAGCAGCTTAGTTCACAGCTGCCTTCTCAGACCGGAAGCAACCCCAGTACAGTTACTGGCAATACCCCGCCTGATATGCCTACAAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTTATAAGTACTACTACAACTGTGTAACTTGTGAAAGCAGATGGGAGAAGCCTGAGGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCAGGAGCAGGAGGATAATACCTGTAGTCTCTCACAATTGTCGTTATCTTCCTCTCAACTAGTTGATAAAAAACAAAAGGAAACAAATCATGACCACAGGCAGCAGTCAGAAACAAGTCCTGTTGTTGGATAG | 1491 | 0.4386 | METPKEQQRVNFNGDPPNPHTHDNGSNGFNHFHPTPSVDSGYALNHSIPRPLRKRPWHHSNNGTSPDQVDGSCHVKVYVAPVPRTATEAEIRLVFEEHGTIVEIVLLKDKRTGTRQGSCFVKYATFDEADRAIKALNNQYTFAGESCPVVVKFADRELQRLGFCRNMEMKDPLEEVADKVFVSSINKEATKKDIEEIFSPYGHVEDIFLVSNRGYAFVKFSNREMALAAIKGLNRTFTMRGCDNPLIVRFADPKKPKTGESRGNYLSVNANFGPCSQEPAVWALPNFGDSNSGGSILPIAPYHSTIAHPQVTSHMQNWEPGATVVQHPFPPHQVHSQLASMPLGSIQAPKLSSQPFITEVQRQSHPADSSVQNIEQQLSSQLPSQTGSNPSTVTGNTPPDMPTSPQDEDFPECDWSEHYCPDGYKYYYNCVTCESRWEKPEEYALYEKESQKQQEQEDNTCSLSQLSLSSSQLVDKKQKETNHDHRQQSETSPVVG | 496 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g03477 | 496 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 75 | 156 | IPR000504 | GO:0003723 | |
Pumo5g03477 | 496 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
Pumo5g03477 | 496 | Gene3D | - | 411 | 458 | - | - | |
Pumo5g03477 | 496 | SUPERFAMILY | WW domain | 414 | 446 | IPR036020 | GO:0005515 | |
Pumo5g03477 | 496 | SMART | ww_5 | 410 | 442 | IPR001202 | GO:0005515 | |
Pumo5g03477 | 496 | Gene3D | - | 65 | 160 | IPR012677 | - | |
Pumo5g03477 | 496 | MobiDBLite | consensus disorder prediction | 448 | 496 | - | - | |
Pumo5g03477 | 496 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Pumo5g03477 | 496 | CDD | WW | 413 | 442 | IPR001202 | GO:0005515 | |
Pumo5g03477 | 496 | Gene3D | - | 168 | 261 | IPR012677 | - | |
Pumo5g03477 | 496 | MobiDBLite | consensus disorder prediction | 357 | 411 | - | - | |
Pumo5g03477 | 496 | Pfam | WW domain | 413 | 440 | IPR001202 | GO:0005515 | |
Pumo5g03477 | 496 | SMART | rrm1_1 | 76 | 152 | IPR000504 | GO:0003723 | |
Pumo5g03477 | 496 | SMART | rrm1_1 | 179 | 249 | IPR000504 | GO:0003723 | |
Pumo5g03477 | 496 | ProSitePatterns | WW/rsp5/WWP domain signature. | 415 | 440 | IPR001202 | GO:0005515 | |
Pumo5g03477 | 496 | MobiDBLite | consensus disorder prediction | 456 | 475 | - | - | |
Pumo5g03477 | 496 | FunFam | Flowering time control protein FCA isoform A | 400 | 460 | - | - | |
Pumo5g03477 | 496 | SUPERFAMILY | RNA-binding domain, RBD | 179 | 263 | IPR035979 | GO:0003676 | |
Pumo5g03477 | 496 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 77 | 143 | IPR000504 | GO:0003723 | |
Pumo5g03477 | 496 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 180 | 238 | IPR000504 | GO:0003723 | |
Pumo5g03477 | 496 | MobiDBLite | consensus disorder prediction | 357 | 403 | - | - | |
Pumo5g03477 | 496 | SUPERFAMILY | RNA-binding domain, RBD | 24 | 154 | IPR035979 | GO:0003676 | |
Pumo5g03477 | 496 | PANTHER | RNA BINDING PROTEIN | 38 | 448 | - | - | |
Pumo5g03477 | 496 | FunFam | Flowering time control protein FCA isoform B | 60 | 161 | - | - | |
Pumo5g03477 | 496 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 415 | 442 | IPR001202 | GO:0005515 | |
Pumo5g03477 | 496 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 178 | 253 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g03477 | Pumo-Chr5 | 84044205 | 84053783 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g03477 | 77 | 281 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 26.728 | 3.82e-11 | 63.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g03477 | K13207 | - | gmx:100795107 | 862.833 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo5g03477 | 5 | 84044205 | 84053783 | Pumo5g03477 | 5 | 84044205 | 84053783 | ECH |