Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03476 ATGGAGAATAATAATAATAATAATAATAATAATAAGATGATGATGATGGGTATGAAGAAGGAGGAGTACTATGCTGCCAATATGGGATCTTCATCCTTCCCTTGTAGTAACAATAATTATCCATTCTTTGATTTCTCTGAAGATAAGGGCTCTTTAGGGTTTATGGAGTTATTGGGTGTGCAAGACTATAGTCCTCTCCTTGATTTCCCTCTATCGTCACACGTGTCAGTGCCTCAAACCTCTGCTGTTAAGGAACCACCTCAGACTAAGAAAGAGTGCTCCGAGGTAACCAACCTGCAGCAACCTGCCACTCCGAACTCTTCATCCATTTCCTCCGCCTCCAGTGAAGCACTCAATGATGAACAGAATAAAACTGTGGACCAAGCACATGAACACCAGAAGACCAAGGAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACTAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGCGATCTTTCACCGATCCAAGCATTGTGGTGACAACCTACGAAGGCCAACACACACATCCAAGCCCAGTTATGGGTCGCTCCAACAACTTTGGTTCGGTAATGTCCGGATCTGGAAATGGAAACTACATGTCCCAATATTATCATCAACAACTCCACTTCAATGCATTGTCTTCTTTGGGTTTCCTTTCTTCTTCGTCTTCAAGGAATGCCACTTTTCCTCAAGACACTGCCTTGTTAAGTGACTATGGCCTTCTTCAAGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG 903 0.4319 MENNNNNNNNNKMMMMGMKKEEYYAANMGSSSFPCSNNNYPFFDFSEDKGSLGFMELLGVQDYSPLLDFPLSSHVSVPQTSAVKEPPQTKKECSEVTNLQQPATPNSSSISSASSEALNDEQNKTVDQAHEHQKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSIVVTTYEGQHTHPSPVMGRSNNFGSVMSGSGNGNYMSQYYHQQLHFNALSSLGFLSSSSSRNATFPQDTALLSDYGLLQDVVPSHMLKEE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03476 300 MobiDBLite consensus disorder prediction 123 150 - -
Pumo5g03476 300 MobiDBLite consensus disorder prediction 78 150 - -
Pumo5g03476 300 Coils Coil 129 149 - -
Pumo5g03476 300 MobiDBLite consensus disorder prediction 78 122 - -
Pumo5g03476 300 FunFam WRKY transcription factor 57 151 225 - -
Pumo5g03476 300 PIRSF WRKY_txn_fact_IIc 9 300 IPR017396 GO:0003700
Pumo5g03476 300 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 78 248 IPR044810 GO:0003700
Pumo5g03476 300 Gene3D WRKY domain 150 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03476 300 ProSiteProfiles WRKY domain profile. 160 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03476 300 SUPERFAMILY WRKY DNA-binding domain 157 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03476 300 Pfam WRKY DNA -binding domain 166 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03476 300 SMART WRKY_cls 165 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03476 Pumo-Chr5 84040703 84042500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03476 33 300 WRKY Transcription Factor Family AT2G47260 49.085 9.92e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g03476 WRKY 2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03476 - - gmx:100816452 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03476 5 84040703 84042500 Pumo5g03476 5 84040703 84042500 ECH
Pumo5g03476 5 84040703 84042500 Pumo3g02156 3 33337311 33340401 PCT