Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03472 ATGTCGAAGCGGAAGTTCGGGTTCGAAGGGTTCGGCATAAACCGCCAATCCACCTACAGCTTCGAGCGATCCCAGGCCCCTCAGCGACTCTATGTCCCTCCCTCCGCGCGCCACGGCCACGACAACTACGAGGACACCGACCTCGACAACATCGAATACGACGACAACAACGACGAGGGGAATAAGAATAACAACGGCGGCAACGACGACGACGAAATCGACCCCCTCGACGCCTTCATGGAGGGCATTCACGAGGAGATGCTGGCGGCGCCGCCGCCGAAGCCGAAGGAGAAGGCGGAGGACCGGTACCGCGACGACGAGGACAACGATCCCATGGAGAGCTTTCTGAAGGCGAAGAAGGATTTAGGGTTGACTCTCGCGTCGGAGGCGCTGCACGCTGGGTATGATTCGGATGAGGAGGTTTATGCTGCTGCCAAAGCTGTGGACGCTGGCATGATTGAGTATGATTCTGATGATAACCCTATTGTTATTGACAAGAAGAAAATTGAGCCCATTCCTGCTCTCGATCACTCTTCCATTGATTACGAGCCCTTCAATAAGGATTTTTACGAGGAGACACCTTCAATATCAGGTATGAGTGAGCAGGATGTAAGTGAATACCGGAAGAGTTTGGCTATTCGAGTATCGGGTTTTGATGTTCCTAAGCCAATAAAGACATTTGAGGACTGTGGGTTTCCTTCACAGATTATGAATGCTATAAAAAAACAAGGGTATGAGAAGCCGACATCTATACAATGTCAGGCTTTGCCTGTTGTGCTTTCTGGCAGGGATATCATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTTCTTTTGTGCTTCCTATGATCGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAGGAAGGGCCTATAGGGGTGATATGTGCACCTACCAGAGAGTTGGCACATCAGATATATCTGGAGGCCAAGAAATTTGCAAAAGCGTATGGGGTACGCGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCTGGATGTGAGATAGTTGTTGCTACCCCTGGAAGATTGATAGACATGCTGAAAATGAAGGCATTGACGATGATGAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGAATGTTTGATCTTGGGTTTGAGCCACAAGTAAGGTCCATTGTTGGGCAGATTAGGCCGGACCGCCAAACTTTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACCGATCCTATTAGAGTAACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCTTCTGATTCTGAGAAATTGCCTTGGCTCCTGGAAAAGCTGCCTGAAATGATTGATCAAGGCGATACCCTAGTTTTTGCTTCGAAAAAGGCTACTGTGGATGAAATTGAATCACAGTTGGCTCAAAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGTATGGACATTTTACAGAAGTTTAAATCTGGCCTCTACCATGTGCTCATTGCAACTGATGTTGCTGCCCGTGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACGGGCCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGTGAATTGGTCAACAGCTTAGTTGCTGCTGGTCAGACTGTGTCCGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAAAGGTAGAGGTGGTGGCGGGGGTGGCCGAGGCGTGCGAGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCTGAGTCAAACAATGCACCATCTACCACAGTTCCCAGTCGATCTGCTGCTGTAAATTCTCTGCGAACAGGAATGATGTCACAATTTAGGAGTAACTTTGTTGCTGCTTCATCAAACTCTCAGAATCAAGGATTCGGTAACAATACAAGCATGGCTGCTAACAAGAGACCAGCACTCCCTGGTTTTGTATCCGGTGGATCAATTGGTGGTGACATAAACACTTATCAGAATACTGCTTCACCCAATCCTGCTACATCAGCGTTAAATTCCACCAGTCAAGGTTCTGGAGTAAATCATGGTCAGAAGAGCACGAACAGTTCTAAACCTAAAGAAAGGCGGAGGCCATCAGGTTGGGATAGATAG 2310 0.4714 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSARHGHDNYEDTDLDNIEYDDNNDEGNKNNNGGNDDDEIDPLDAFMEGIHEEMLAAPPPKPKEKAEDRYRDDEDNDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKTFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQTVSVELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSTTVPSRSAAVNSLRTGMMSQFRSNFVAASSNSQNQGFGNNTSMAANKRPALPGFVSGGSIGGDINTYQNTASPNPATSALNSTSQGSGVNHGQKSTNSSKPKERRRPSGWDR 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03472 769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 256 431 IPR014001 -
Pumo5g03472 769 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 225 253 IPR014014 GO:0003724
Pumo5g03472 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 604 IPR027417 -
Pumo5g03472 769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 456 605 IPR001650 -
Pumo5g03472 769 Pfam DEAD/DEAH box helicase 249 420 IPR011545 GO:0003676|GO:0005524
Pumo5g03472 769 MobiDBLite consensus disorder prediction 612 636 - -
Pumo5g03472 769 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 377 385 IPR000629 -
Pumo5g03472 769 CDD DEADc_DDX42 236 432 - -
Pumo5g03472 769 MobiDBLite consensus disorder prediction 90 109 - -
Pumo5g03472 769 SMART helicmild6 484 565 IPR001650 -
Pumo5g03472 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 434 IPR027417 -
Pumo5g03472 769 Gene3D - 188 432 IPR027417 -
Pumo5g03472 769 FunFam probable ATP-dependent RNA helicase DDX17 187 434 - -
Pumo5g03472 769 MobiDBLite consensus disorder prediction 55 69 - -
Pumo5g03472 769 CDD SF2_C_DEAD 443 575 - -
Pumo5g03472 769 MobiDBLite consensus disorder prediction 1 109 - -
Pumo5g03472 769 MobiDBLite consensus disorder prediction 718 753 - -
Pumo5g03472 769 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 191 605 - -
Pumo5g03472 769 MobiDBLite consensus disorder prediction 713 769 - -
Pumo5g03472 769 Pfam Helicase conserved C-terminal domain 460 565 IPR001650 -
Pumo5g03472 769 SMART ultradead3 244 446 IPR014001 -
Pumo5g03472 769 Gene3D - 433 609 IPR027417 -
Pumo5g03472 769 MobiDBLite consensus disorder prediction 754 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03472 Pumo-Chr5 83959471 83963375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03472 225 581 Eukaryotic Initiation Factors Gene Family AT3G13920 35.278 2.31e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03472 K12835 - gmx:100814854 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03472 5 83959471 83963375 Pumo5g03472 5 83959471 83963375 ECH