Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03471 ATGTCATTTGGTATATTGAAAAAGGGTCAAGGCTTGGTGCTGAAATGGATGCTTATATTATCTTGCCTGGTATTTATGATTGAGGCTGGTGAAAATGATAAAACAATGGAGCTCCCTTCTTTATATAATTCTAGATCACCTTTGGCCTTTGTTGTTGTTCATGATCTACCTCTACCAGCAAATTTCCACGTGTCGAAGCATGTGCTTTCTCATGGTGCACCGATTGCAGCACTGTCACCAGTCAATCCTCCTTCATATGGTCCTTTCACAAGTAATGGCCACCCCCCTGCAAGTTCACATTTATCCATACCATTCAAGAAGAAGAGTGAAATGAAACCTCCAATTTCTGGCTTTGAAGATATTGCTCCTGTGCATTCTACTGCAGCTGCAGGCCCTTCCGCTTTGGTCCAGCCACCATTGTCTCCTTATGCTTCTAATTGTTGTAAACAAGACATGGTGCTGAAAAGAGGCAGTAAGGATTGCCGCTGTGCATATCCCATAAAGCTAGACCTTTTTCTTTCAAATGTCTCTCAAAATCCTAATTGGAATGATTTTCTTGATGAATTAGCTACCCAGCTTGGGTTGCGAAATACCCAGATTGAACTGATAAACTTTTATGTACTCAGCTTATCAACATTAAATATATCAATGAATATTACTCCACATAAAGGCATCAGTTTCTCTGCCAATGAAGTTTCTAAAATAAACTCTTCGCTTTCAATGCATAAGGTTCAACTAGACCCTGGATTAGTGGGTGGATACAAACTTCTCAATTTAACGTGGTTTGAACCACCTCCGCCTTCTCAAGCTCCTACTTTAGCTGCATCACCTGTGAATACACCTTTGTATCATTCACCTACTGCTACATCATCATCGAGTTCTCCGAAAAAAGGAAGGCATTCAAATTTGTTTCTTATTCTTGGAATTGCTATTGGCATAATCTTCATTGCTATCGTATCTGTACTTATATTCTGTTTATGTACGTTCCTGCCAAAAGCAAACACACCTCCTATAGAAACTGAAAAGCCAAGGACAGAGAGTGCAATTTCAACTGTGGGTTCTCTTCCCCACCCAACTAGTACACGATTTATTGCTTATGAAGAGCTTAAAGAAGCAACAAACAATTTTGAACCAGCAACCGTACTTGGAGAAGGAGGATTTGGTAGAGTTTTTAAAGGTGTCTTAAATGATGGTACTCCTGTAGCAATTAAGAGGCTTACAAGTGGAGGGCAACAGGGTGACAAAGAGTTTTTGGTCGAGGTTGAGATGCTTAGTCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTTTAGTAATCATGACTCATCACAAAATTTACTTTGCTATGAGCTTGTTCCTAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCTTGGGAATCAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCGCTTGATGCTGCAAGGGGACTTTCATACCTGCATGAAGACTCACAGCCCTGTGTAATACATAGAGACTTCAAGGCATCCAACATATTGCTTGAGAACAACTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGATACGTAGCTCCTGAATATGCCATGACTGGACACCTACTTGTTAAAAGTGATGTTTATAGCTATGGTGTTGTCTTGCTGGAACTGCTTACTGGTAGGAAGCCTGTGGATATGTCACAGCCAACTGGACAAGAGAACCTTGTTACTTGGGCTAGGCCAATCCTTAGAGATAAGGACCGGTTGGAAGAGATTGCTGATCCAAGACTTGGGGGAAAGTATCCAAAGGAAGATTTTGTACGAGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCGGAAGCAAACCAACGACCCACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCGCATCACAGAATACCAAGATTCTGTGTTAGCTTCAACCAATACTCGACCCAACTTGAGACAGTCCTCTAGCACTTTTGAATTTGATGGAACATCTTCAATGTTCTCATCGGGTCCTTACTCTGGTCTAAGTGCCTTTGACAATGACAACATTTCCAGGACTGTGGTTTTCTCTGAAGATCTTTGTGAAGGACGATGA 2163 0.4166 MSFGILKKGQGLVLKWMLILSCLVFMIEAGENDKTMELPSLYNSRSPLAFVVVHDLPLPANFHVSKHVLSHGAPIAALSPVNPPSYGPFTSNGHPPASSHLSIPFKKKSEMKPPISGFEDIAPVHSTAAAGPSALVQPPLSPYASNCCKQDMVLKRGSKDCRCAYPIKLDLFLSNVSQNPNWNDFLDELATQLGLRNTQIELINFYVLSLSTLNISMNITPHKGISFSANEVSKINSSLSMHKVQLDPGLVGGYKLLNLTWFEPPPPSQAPTLAASPVNTPLYHSPTATSSSSSPKKGRHSNLFLILGIAIGIIFIAIVSVLIFCLCTFLPKANTPPIETEKPRTESAISTVGSLPHPTSTRFIAYEELKEATNNFEPATVLGEGGFGRVFKGVLNDGTPVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYFSNHDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEEIADPRLGGKYPKEDFVRVCTIAAACVAPEANQRPTMGEVVQSLKMVQRITEYQDSVLASTNTRPNLRQSSSTFEFDGTSSMFSSGPYSGLSAFDNDNISRTVVFSEDLCEGR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03471 720 Gene3D Phosphorylase Kinase; domain 1 357 453 - -
Pumo5g03471 720 FunFam Receptor-like serine/threonine-protein kinase ALE2 356 453 - -
Pumo5g03471 720 PANTHER OS01G0750732 PROTEIN 144 667 - -
Pumo5g03471 720 ProSiteProfiles Protein kinase domain profile. 376 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03471 720 Gene3D Transferase(Phosphotransferase) domain 1 454 672 - -
Pumo5g03471 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Pumo5g03471 720 Pfam Protein kinase domain 379 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03471 720 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Pumo5g03471 720 FunFam Receptor-like serine/threonine-protein kinase ALE2 454 670 - -
Pumo5g03471 720 CDD STKc_IRAK 382 652 - -
Pumo5g03471 720 SUPERFAMILY Protein kinase-like (PK-like) 350 653 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03471 Pumo-Chr5 83944124 83952007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03471 12 720 Receptor kinase-like Gene Family AT4G02010 68.636 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Pumo5g03471 Pkinase 8.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03471 - - gmx:100775615 1347.8