Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03467 ATGGACAGTAATACTAGTGCCTCATCAGAAACTCAAACATCAAAGAAACGGAAAATGGTTGAGAAAACAGTTGTGGCAGTGAGGGTAGGAGAGAATGTTGGCAAGCTGAAGAATGAAGGGCTACCTTCGGATTTTTGGTCTTGGAGGAAATATGGACAAAAACCAATCAAAGGGTCTCCATATCCAAGGGGCTATTACAAGTGCAGCACATCCAAAGGTTGTTCAGCCAAAAAGCAAGTAGAGAGATGCAGAACAGATGCTTCAATGCTCATCATCACATACACCTCCACACATAACCATCCATGCCCCACTAACACAAATTCACCCCAACAACCAAAAGAATCCGAATCTGAAACCACCCAAGACCTCTCAGCTACCTCAAAGGAGGAAGACCAAGAACATATAGAAGAAGAGCAAAGGGATAATAAGCCCAGTGATGAAGGTACTAATGAAGAAATTTTTCATTACTTGCAATCTCCGATAAGATGCTCCCAAGACATCATTATAGAGCAAGAAGATCCTTTCAAACTAAACACGGAGAAAAGTCATGACAGAATGGATCTCCTCTTAGAGGAAGAGCCCCTTTGTTATGCACAACTCAAGAACTTGTCTGCTTCCAAAAATGAAGAACTTGACTTTTTCGATGAGCTTGAGGAGTTGCCCATGTCTTCATCTTTTTTGCACTTTACGAGGAACATTTTTTCCGATGAAAGGATTCCCGTTGCCCCTTCTTGA 735 0.419 MDSNTSASSETQTSKKRKMVEKTVVAVRVGENVGKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPCPTNTNSPQQPKESESETTQDLSATSKEEDQEHIEEEQRDNKPSDEGTNEEIFHYLQSPIRCSQDIIIEQEDPFKLNTEKSHDRMDLLLEEEPLCYAQLKNLSASKNEELDFFDELEELPMSSSFLHFTRNIFSDERIPVAPS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03467 244 Gene3D WRKY domain 28 104 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03467 244 ProSiteProfiles WRKY domain profile. 37 103 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03467 244 MobiDBLite consensus disorder prediction 96 149 - -
Pumo5g03467 244 MobiDBLite consensus disorder prediction 96 122 - -
Pumo5g03467 244 FunFam WRKY transcription factor 65 26 103 - -
Pumo5g03467 244 SUPERFAMILY WRKY DNA-binding domain 40 103 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03467 244 MobiDBLite consensus disorder prediction 123 149 - -
Pumo5g03467 244 Pfam WRKY DNA -binding domain 44 101 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03467 244 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 9 225 IPR044810 GO:0003700
Pumo5g03467 244 SMART WRKY_cls 42 102 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03467 Pumo-Chr5 83922162 83925164 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03467 7 226 WRKY Transcription Factor Family AT4G01250 39.732 6.72e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g03467 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03467 - - gmx:100127368 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03467 5 83922162 83925164 Pumo5g03467 5 83922162 83925164 ECH