Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03455 ATGAGCACCAAGAACCTCAATTTCGAAGCAGACATAGCTCTGGCGAAGGATTTCCTTTCCAACTTTGCAGACGCCAATGGCGAAGCCAAATACATAAACATCATGCAAGATGTTGCGAACCACAAAACTCGAGCAGTCCAGATCGACCTTGAGGACTTATTTAATTACAAAGATCTGGATGAGGAATTCCTGAGCCGTGTTACTGAGAATACTCGAAGGTATATTGGGATTTTTTCCAATGCAATTGATGAACTCATGCCGGAGTCCACTGAGGACTTCACAGATGATGATCATGACATATTGATGACTCAGAGATCTGATGAAGGAGCAGAAGGCACTGACGGTTCCGACCCACTTCAGAAGATGCCTGCTGAAATCAAGCGTTACTATGAGCTTTATATTAAAGCATCTTCAAAAGGACGACCATTTACAATTAGGGAGGTGAAAGCTTCAAACATTGGTCAGCTTGTGAGAATCTCTGGTATTGTGACGCGTTGTTCAGATGTTAAACCATTGATGAAAGTGGCTGTATACACGTGTGAGGATTGTGGATTTGAAATTTACCAGGAAGTAACGGCTCGAGTCTTCATGCCCTTGTTTGAATGTCCATCAAGGCGTTGTGCTACAAATAGAAGAAAGGGGAATGTTATCCTTCAACTGAGAGCATCAAAGTTTTTGAGATTTCAAGAGGTGGCTCCAGGTGATGTTGTTGAATTATCTGGGATTTTTCTTCCTATACCGTACACTGGTTTTCGAGCAATGCGTGCGGGCTTAGTTGCTGACACTTACTTAGAGGCCATGTCTGTAACTCATTTCAAGAAAAAATATGAAGAATATGAACTTAGAGGAGATGAGGAAGAGCAGATTGCACGATTAGCAGAGGATGGTGACATCTACAATAAATTGGCACGATCACTTGCTCCTGAAATTTTTGGACATGATGACATTAAAAAAGCACTGCTTCTTCTCCTTGTTGGTGCTCCCCATCGGACATTGAGAGATGGAATGAAGATTAGAGGAGATTTACATATATGTTTGATGGGTGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACACATAATCAATATAGCACCCAGAGGGGTGTACACCACTGGCAGAGGAAGTAGTGGAGTTGGTCTAACTGCTGCTGTTCAGAAAGATCCAGTGACAAATGAGATGGTTCTTGAAGGTGGAGCATTGGTGCTAGCGGATATGGGCATATGCGCCATTGATGAATTTGACAAGATGGACGAATCAGATCGTACTGCTATACATGAAGTTATGGAGCAACAGACCGTTAGCATTGCCAAGGCTGGGATCACTACATCGCTGAATGCAAGGACTGCTGTCCTTGCTGCTGCTAATCCAGCATGGGGAAGATATGATCTAAGGAGAACTCCAGCTGAGAATATTAATCTTCCTCATGCCCTCCTATCAAGGTTTGATCTTCTGTGGTTAATCCTTGATCGAGCTGATATGGATAATGATCTTGAACTGGCTAGGCATGTTGTATATGTTCACCAAAATAAGGAGTCTCCTGCTCTAGGATTCGCTCCTCTTGAACCATCTGTTCTACGTGCCTACATATCAGCTGCAAGAAGATTGTCTCCTAGTGTCCCCAGGGAACTGGAAGAGTATATTGCTACTGCATACTCCAGCATTCGTCAAGAAGAAGCAAGGTCCAATGCTCCGCATTCCTACACTACTGTCAGAACATTGCTTAGTATTCTCCGCATATCAGCTGCACTAGCAAGACTCCGTTTTTCTGAAACTGTTGCTCAGAGTGATGTGGATGAAGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTGTACTCTGACGACCGTCAAAAATCTGGTCTGGATGCCATATCTGATATTTATTCCATACTGCGAGATGAAGCAGCTAGAGGTAACCGAATGGATGTCAGCTATGCCCATGCACTGAACTGGATATCTAGGAAGGGTTACAGCGAAGCCCAGTTAAAAGAGTGCTTGGAGGAGTATGCAGCACTAAATGTATGGCAGATACATCCTCACACCTTTGACATTAGATTTATTGATGCTTAA 2073 0.4322 MSTKNLNFEADIALAKDFLSNFADANGEAKYINIMQDVANHKTRAVQIDLEDLFNYKDLDEEFLSRVTENTRRYIGIFSNAIDELMPESTEDFTDDDHDILMTQRSDEGAEGTDGSDPLQKMPAEIKRYYELYIKASSKGRPFTIREVKASNIGQLVRISGIVTRCSDVKPLMKVAVYTCEDCGFEIYQEVTARVFMPLFECPSRRCATNRRKGNVILQLRASKFLRFQEVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTYLEAMSVTHFKKKYEEYELRGDEEEQIARLAEDGDIYNKLARSLAPEIFGHDDIKKALLLLLVGAPHRTLRDGMKIRGDLHICLMGDPGVAKSQLLKHIINIAPRGVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPHALLSRFDLLWLILDRADMDNDLELARHVVYVHQNKESPALGFAPLEPSVLRAYISAARRLSPSVPRELEEYIATAYSSIRQEEARSNAPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARGNRMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03455 690 SUPERFAMILY Nucleic acid-binding proteins 15 266 IPR012340 -
Pumo5g03455 690 Pfam MCM N-terminal domain 16 134 IPR027925 -
Pumo5g03455 690 Pfam MCM OB domain 145 231 IPR033762 -
Pumo5g03455 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 619 IPR027417 -
Pumo5g03455 690 FunFam DNA replication licensing factor MCM7 11 102 - -
Pumo5g03455 690 Gene3D - 145 231 IPR012340 -
Pumo5g03455 690 Gene3D - 172 226 - -
Pumo5g03455 690 SMART AAA_5 340 493 IPR003593 GO:0016887
Pumo5g03455 690 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 178 189 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Pumo5g03455 690 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 160 171 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Pumo5g03455 690 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 195 207 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Pumo5g03455 690 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 122 134 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Pumo5g03455 690 FunFam DNA replication licensing factor MCM7 283 615 - -
Pumo5g03455 690 SMART mcm 141 610 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo5g03455 690 ProSiteProfiles MCM family domain profile. 298 504 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03455 690 PRINTS Mini-chromosome maintenance (MCM) protein family signature 339 354 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03455 690 PRINTS Mini-chromosome maintenance (MCM) protein family signature 427 440 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03455 690 PRINTS Mini-chromosome maintenance (MCM) protein family signature 399 413 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03455 690 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 486 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03455 690 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 463 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03455 690 ProSitePatterns MCM family signature. 407 415 IPR018525 GO:0003677|GO:0005524|GO:0006260
Pumo5g03455 690 Pfam MCM AAA-lid domain 525 608 IPR041562 -
Pumo5g03455 690 Pfam MCM P-loop domain 286 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo5g03455 690 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 16 231 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo5g03455 690 CDD MCM7 301 608 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Pumo5g03455 690 FunFam DNA replication licensing factor MCM7 172 226 - -
Pumo5g03455 690 Gene3D - 12 103 - -
Pumo5g03455 690 Gene3D - 283 615 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03455 Pumo-Chr5 83821314 83826088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03455 4 688 Core DNA Replication Machinery Family AT4G02060 80.839 0.0 1198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03455 K02210 - gmx:100811639 1291.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03455 5 83821314 83826088 Pumo5g03455 5 83821314 83826088 ECH