Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03454 ATGGTTTTACGGCCCTCGTTTTTTGTCATCCTACTGGCATATGCTGCGCTGTTAGTTCTTCTCTCATTGACATCATGCTGGTATACCATGGTGATGCACATAGAGCACCACGTGAATTTGAATTCAGAAAATGTTCTCTCCCAATTCCAATCCGAAATTGAGCATTCGGCTGGACTGATACACCCTATAAATTCGTCCTCAACCAATTTTGCAAAACTTTTGAGTTCAACTCTTCAAAATACTAGCATTTCATTCTCTGATATCAAGGACCAAGTTAATAACATATTACATGAAGATGGATTGAGACTAAATCATTCGAACCATGTAGTGGCTCCGTTATTATTTCAAGCATTTGAGACGGTTCCTCACTTAGCCCAAATTTCATACACACAAACGGAAGGTCTATTTTTCTCATACTACACTGATCATGATCAAGTTTTGGCAATGTACTCAAACTCATCATCAAATTTAAGCGTATACTATATCCAGCCCGTAAATATTAATAGTTCACTTGGTTATGCCTCATTGGGAACCAAGTGGAACAATGGTCATGATCTTCTATTCATTAGTTCAGCTAGAATCAAGGGGACACAACAAGTGGTCTCTCTCGGTTTTCCAGTAACAACTATAACTGATTTTTTCACTCACCAAGGCGCGAGTTTGTCTTTGGTGACCAAAGATGGGGAAGTGCTTGTAGAAGGGATCCAAAATACTCGTTTGGGCTTTTCTAATGACATGGTTTCGTTCCAATCAGTGAATGCAAATGGTGATCAAACAAGTTATTATGACGGCACCGTTTCATGCAAAGATGGAGATGCTGCTTCTATTTTGAATATTCAGGATGTTGAGTATTTAATTCGCTGCTCCCCCATTGATATAATGGGAATAGAATCGGTGTATGTTTTGGCTGTCCCACGAAATGGATTGGTACGCTTTGTTCTGGACATTAAGAATAAAGGATTGACGCTGTTGACTGCGATGATGGTCATGATAGTCATTGCCATGGTGAGTTTTCTATATATAAATGTTAGATCAGTAAGGCGAGAAATGCATTTGTGTTGGTCACTCATCAAACAAAATGAAGCCACCCAACAAGCTGAGCGAAAGTGTATGAATAAGAGCCTTGCTTTTGCTAGTGCCAGCCACGACGTTCGCGCTTCCCTGGCAGGTCTTACTGGTTTGATAGAGATGTCTTATCATGAAGTTGCCCCTGCTTCTGAATTAGGAACCAACTTGAGACAAATGGATTCTTGTACCAAAGATTTACTAGGACTCTTGAATTCTCTACTTGATACGAGCAAAGTTGAAGCGGGAAAAATGCTGCTTGAGGAAGAGGAATTCGATGTATTCCAACTCCTAGAAGATGTAGTTGATTTATACCATCCTGTGGCTACGAAGAAAGGAGTAGATATTGTGTTGGACCCTTGTAATGGTTCTGTACTCAGATATTCACGCACAAAAGGCGACAGAGGCAAACTCAAACAAGTTTTGTGCAACTTACTGAGCAATGCTGTTAAATTTACTGAGGAGGGGCACATAGCAGTTCGAGCTTGGGCTCAGAAGCCAAGCTTGCAGAGCTCAATGATCACTACTCAGCGATACGGGTCCAGTAGACTTTTGTCACGCTTATGTTACAGGAAAAATGAAGCACGTGATGATGTGAACTCAATCCAACAAGATCCAAATTGTGTGGATTTTACTTTTGAAGTGGATGACACTGGCAAAGGAATTCCTAAAGAGAAGCACAAGTCTGTTTTTGAGAATTATGTCCAAGTCAAAGAAACTGCTCTTGGCCAAGGAGGAACTGGCTTGGGACTTGGTATTGTTCAGTCACTGGTACGTTTGATGCATGGAGATATTGGAATCATGGACAAGGATATTGGTGAAAAGGGAACCTGCTTTAGGTTCAATGTACTCCTCACTGTCCATGAGACAGAGGTGAATGATGACACAAGAGATGACCAAGTTGGATCAGGTAACAGAAACCAGTCTCATCGACTAACCATGAGTCCCAAGTTATCTATTTGGACCCGTAGTCCTAGATCCGAGGCTTCTCGAGTTGTTCTTTTGATTCAGAACGAGGAGCGTCGCAGGACTACACAGAGGTTCATGGAGAGGTTAGGGATCAAAGTTAAGATTGTGAAGGAGTGGAGACAACTTCATTACACTCTGAGGAAGATCATCAAACAAAAGGGTCTCCATCCAAATAGCCCAAGCTCGCCAGAGTCTTCAGATTCTCCCTCTGCATCACTTGGAGCCAACGGATTTCAATCTTTGAGTGCACAAGATGGAACTGACTATACAAGTTCAATCTTCAAGAGGGTAGCTATTGAAGCTTCCTTTGGTTTCGTCCTGGTTGTGATTGATGCAAATGCAGGACCCTTTTCAGAGCTTTGCAAAGTGGTATCTGACTTCAAAAGAGGCCTTTGCTACCCTTGTAGGGTGGTTTGGTTGGAGAATCCACTTATGCCTGCTGTGGACTACAAAATCCTTAACAAGGATGTTTCTAATTCAAACGACATTGTCTTATCTAAGCCACTTCATGGTCATCGTTTATTCCAAGTTATAAGGATTCTCCCCGAGTATGGGGGTGTTTGGCCATGCAGTTCTAGTGGAACAAAGAAAGAAAAGGGTCAAGTTTCCTCAACTGATGAAGTTGCAATTCGAAGTGTTGAACTACGAGAGTGTGGCAGCTCAAGTGTTACACAGCAATCCTTTGAAGGCCAATCTTATGATAGATCTAAAGCAAGAAAATCTCCGGTCCACCAAGGAGAAATACAAGAATGTGAAGAGTCAAGCAATGACAAACCCTTGTGGGGTATGAAATTTTTGGTTGTTGAGGACATTGTTTTGTTACGCAGGATAACTAAGTCTACTCTTGATCGGCTTGGTGCTTTTGTCACGGAATGCAAAAATGGTGAACAAGCTGTTCAGATAGTTGAAGAAGGTCTAACTAGGAATTCTTCCAATCCTCCGTATGATTATATCTTAATGGACTGCCAGATGCCGGTAATGGATGGATATGAGGCAACGAGACAGATAAGGGAGATTGAGAAGTCTCATGGTGTTCACATTCCTATCTTTGCATTAACCGCTAATACAGGGGAAGAGGCAAAAATGTCCATTGAAGCTGGAATGGACGATCACTTAATCAAACCCATCAACAAAGAGGCTTTACTTAAAGCCATCAAAAGAATATATACTAAAGAGTGA 3213 0.4152 MVLRPSFFVILLAYAALLVLLSLTSCWYTMVMHIEHHVNLNSENVLSQFQSEIEHSAGLIHPINSSSTNFAKLLSSTLQNTSISFSDIKDQVNNILHEDGLRLNHSNHVVAPLLFQAFETVPHLAQISYTQTEGLFFSYYTDHDQVLAMYSNSSSNLSVYYIQPVNINSSLGYASLGTKWNNGHDLLFISSARIKGTQQVVSLGFPVTTITDFFTHQGASLSLVTKDGEVLVEGIQNTRLGFSNDMVSFQSVNANGDQTSYYDGTVSCKDGDAASILNIQDVEYLIRCSPIDIMGIESVYVLAVPRNGLVRFVLDIKNKGLTLLTAMMVMIVIAMVSFLYINVRSVRREMHLCWSLIKQNEATQQAERKCMNKSLAFASASHDVRASLAGLTGLIEMSYHEVAPASELGTNLRQMDSCTKDLLGLLNSLLDTSKVEAGKMLLEEEEFDVFQLLEDVVDLYHPVATKKGVDIVLDPCNGSVLRYSRTKGDRGKLKQVLCNLLSNAVKFTEEGHIAVRAWAQKPSLQSSMITTQRYGSSRLLSRLCYRKNEARDDVNSIQQDPNCVDFTFEVDDTGKGIPKEKHKSVFENYVQVKETALGQGGTGLGLGIVQSLVRLMHGDIGIMDKDIGEKGTCFRFNVLLTVHETEVNDDTRDDQVGSGNRNQSHRLTMSPKLSIWTRSPRSEASRVVLLIQNEERRRTTQRFMERLGIKVKIVKEWRQLHYTLRKIIKQKGLHPNSPSSPESSDSPSASLGANGFQSLSAQDGTDYTSSIFKRVAIEASFGFVLVVIDANAGPFSELCKVVSDFKRGLCYPCRVVWLENPLMPAVDYKILNKDVSNSNDIVLSKPLHGHRLFQVIRILPEYGGVWPCSSSGTKKEKGQVSSTDEVAIRSVELRECGSSSVTQQSFEGQSYDRSKARKSPVHQGEIQECEESSNDKPLWGMKFLVVEDIVLLRRITKSTLDRLGAFVTECKNGEQAVQIVEEGLTRNSSNPPYDYILMDCQMPVMDGYEATRQIREIEKSHGVHIPIFALTANTGEEAKMSIEAGMDDHLIKPINKEALLKAIKRIYTKE 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03454 1070 PANTHER TWO-COMPONENT HISTIDINE KINASE 47 1065 - -
Pumo5g03454 1070 SUPERFAMILY CheY-like 938 1067 IPR011006 -
Pumo5g03454 1070 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 359 440 IPR036097 GO:0000155|GO:0007165
Pumo5g03454 1070 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 427 637 IPR036890 -
Pumo5g03454 1070 ProSiteProfiles Response regulatory domain profile. 942 1067 IPR001789 GO:0000160
Pumo5g03454 1070 CDD REC_hyHK_CKI1_RcsC-like 943 1063 - -
Pumo5g03454 1070 SMART REC_2 941 1063 IPR001789 GO:0000160
Pumo5g03454 1070 MobiDBLite consensus disorder prediction 731 755 - -
Pumo5g03454 1070 ProSiteProfiles Histidine kinase domain profile. 379 642 IPR005467 -
Pumo5g03454 1070 MobiDBLite consensus disorder prediction 899 932 - -
Pumo5g03454 1070 Pfam Response regulator receiver domain 944 1064 IPR001789 GO:0000160
Pumo5g03454 1070 Gene3D - 920 1069 - -
Pumo5g03454 1070 PRINTS Bacterial sensor protein C-terminal signature 600 618 IPR004358 GO:0016310|GO:0016772
Pumo5g03454 1070 PRINTS Bacterial sensor protein C-terminal signature 566 580 IPR004358 GO:0016310|GO:0016772
Pumo5g03454 1070 PRINTS Bacterial sensor protein C-terminal signature 584 594 IPR004358 GO:0016310|GO:0016772
Pumo5g03454 1070 SMART HisKA_10 372 438 IPR003661 GO:0000155|GO:0007165
Pumo5g03454 1070 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 488 640 IPR003594 -
Pumo5g03454 1070 Gene3D - 440 647 IPR036890 -
Pumo5g03454 1070 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Pumo5g03454 1070 MobiDBLite consensus disorder prediction 733 755 - -
Pumo5g03454 1070 SMART HKATPase_4 488 642 IPR003594 -
Pumo5g03454 1070 MobiDBLite consensus disorder prediction 911 932 - -
Pumo5g03454 1070 Gene3D - 355 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03454 Pumo-Chr5 83813771 83819324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03454 4 1069 Histidine Kinase Gene Family AT2G47430 38.190 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo5g03454 HATPase_c 8.2e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03454 - - gmx:100790376 1682.15