Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03451 ATGGCAGAGGTTGTCTTGCTAGTCGATGATTTGAAATTGCTTTCTGGGATTCCTCGCTGTAGAATTTGTCATGAAGAAGAATTTGAAAGCGTAGAAACCTTGGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGTTTACACTAGTCTTACTTGTAAGACATCTTTTCGCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTGACTGTAATTATATTAAAGGCTAGCGGAATTATTATACCTATGTACATAGTTGTTAAGATTATCGGAGCCATTCAGAACAGTATTCAGCACTATCAGGATTCTGACTATGACACGTCAATGTCTGACGAAGATGACGAAAATGAGATACAGCATAATGAAAATTCAAGACATTTATAG 462 0.3788 MAEVVLLVDDLKLLSGIPRCRICHEEEFESVETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQFTLVLLVRHLFAVLTNGTEDYPFTLLTVIILKASGIIIPMYIVVKIIGAIQNSIQHYQDSDYDTSMSDEDDENEIQHNENSRHL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03451 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 74 IPR013083 -
Pumo5g03451 153 Pfam Protein of unknown function (DUF3675) 66 116 IPR022143 -
Pumo5g03451 153 SUPERFAMILY RING/U-box 18 69 - -
Pumo5g03451 153 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Pumo5g03451 153 CDD RING_CH-C4HC3_MARCH 20 67 - -
Pumo5g03451 153 FunFam E3 ubiquitin-protein ligase MARCH4 9 72 - -
Pumo5g03451 153 MobiDBLite consensus disorder prediction 130 153 - -
Pumo5g03451 153 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Pumo5g03451 153 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 69 IPR033275 -
Pumo5g03451 153 SMART ringv_2 19 68 IPR011016 GO:0008270
Pumo5g03451 153 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03451 Pumo-Chr5 83797380 83799590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03451 20 67 C3H Transcription Factor Family AT2G37950 42.857 1.97e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03451 - - vum:124822982 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03451 5 83797380 83799590 Pumo5g03451 5 83797380 83799590 ECH
Pumo5g03451 5 83797380 83799590 Pumo3g02181 3 33559969 33563904 PCT