Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03443 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGAAGGTGGACAGCGGAGGAGGATGATATTTTGACCAAGTACATTCAAGCCAATGGAGAAGGTTCCTGGAGATCATTGCCAAAAAATGCAGGATTGTTAAGATGTGGGAAGAGTTGCAGGCTAAGGTGGATTAACTATCTGAGAGCTGATCTCAAAAGAGGGAACATATCTGTTGAGGAGGAAAATACCATTGTGAACTTGCATGCTTCGTTTGGCAACAGGTGGTCGTTGATAGCAAGTCACTTGCCGGGAAGAACAGACAACGAGATAAAAAATTACTGGAACTCTCATTTGAGCAGGAAAATTTACACATTCCGTGCGACAACTACTAAAGAGATCATCACCTTACCTCCTAGGTGCAAACGTGGTAGGACCAGCCGCTGGGCCATGAAGAAAAACAAAACCTATGCCCAAAGCCCAAAACAAATTCATCAGAATAACGAAGCACCAGTTCCTCTCCCACCAACCCCGCCACTTGAGACAGAGAATTATTTGTCCAACGATATAATGGAGGAACAAGTTGACGGGTCGAGTGCTAGTACAACCCATCAACATGAAAATACTACTATTCCTCACGAAGAAAACGTTGGTACTATGGGCGTTGAAGGTGAGAAAGAAAAAGAAATAATAATAAACGAGGACGACATATGGGGACCGTTTGATGAGGAAGTTATTAATGGGGCAGAGGGAGAGGTGTTGAATTTTGATAATTGCTGCCAGGAAGCAAGTGGGGTTTGGACCATTTCTGGTGAACAAAGAGAGACCAATGAAAAAGGTGACGACACATGTCCCAACGTTATGATGTCGAGTGGGGAGTTGCATTCTTCTTCTTCCTCTTCCATGGCTTCGGGCTTGGATGAAAACCTTCTGACTTGGCTGTGGGAAGATGAAGACTGGGAAAAAGATTTTCAGAGCCTCGGAGAGATTGATAGTGAGAAGCAAAATGCTATGGTTGATTGGTTTCTCTCTTCGAGTTAA 1020 0.4412 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISVEEENTIVNLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYTFRATTTKEIITLPPRCKRGRTSRWAMKKNKTYAQSPKQIHQNNEAPVPLPPTPPLETENYLSNDIMEEQVDGSSASTTHQHENTTIPHEENVGTMGVEGEKEKEIIINEDDIWGPFDEEVINGAEGEVLNFDNCCQEASGVWTISGEQRETNEKGDDTCPNVMMSSGELHSSSSSSMASGLDENLLTWLWEDEDWEKDFQSLGEIDSEKQNAMVDWFLSSS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03443 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo5g03443 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo5g03443 339 CDD SANT 16 61 IPR001005 -
Pumo5g03443 339 MobiDBLite consensus disorder prediction 150 171 - -
Pumo5g03443 339 Gene3D - 71 116 - -
Pumo5g03443 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo5g03443 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g03443 339 SMART sant 13 63 IPR001005 -
Pumo5g03443 339 SMART sant 66 114 IPR001005 -
Pumo5g03443 339 FunFam Myb transcription factor 11 67 - -
Pumo5g03443 339 CDD SANT 71 112 IPR001005 -
Pumo5g03443 339 Gene3D - 11 67 - -
Pumo5g03443 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo5g03443 339 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 221 - -
Pumo5g03443 339 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo5g03443 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03443 Pumo-Chr5 83694596 83703394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03443 1 162 MYB Transcription Factor Family AT5G49330 63.388 5.00e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g03443 Myb_DNA-binding 3.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03443 K09422 - gmx:100817316 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03443 5 83694596 83703394 Pumo3g02194 3 33716147 33721739 PCT