Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03440 ATGTCTGATAATCGTGACATTCACAGCTCATCGGCACCGAAACTATTTGGTTTCCCACTAACAGAGCAGGAGGAATTTGCAGAAAGAAAATACGATGTTGGAGAGAGCAGAAAATTCAGGTGCCACTATTGCAAACGAGTATTCGCAAACTCACAGGCCTTAGGGGGCCACCAAAACGCCCACAAGAAAGAGCGTCAGAGAGCGAGGCGTTTCCAAATCCACACTCATAGACGCTCCATAGCAATAGCAGCAGCATCATCTTCTGCTCCTGTTCTCACCTCACATGCAATAATAAGATCATCAGTAGTACCACCGCACCCACCATCATCTGTTACAGTTACAGTACCCTCCATTTACTTACGAGGAGGCCCTCCTTCTCCTGTACCCATCTTCCATCCTCGTCAACAATTGCAATCCAATCTTAACACTAAGCACTTCCCCATTTTGATTCCTTCCTCCACCTTCCACCTTACTAATGCTCCTTGCTTTCCTTTTCAGCTTTATGCCTCACCCACTGTACTGCAATCTGCTCCTACTGTCCCTGATTTTTCTTCTGCAGAGAGGGAATTTGTTGATGTCCATCTCAAATTATAA 594 0.4562 MSDNRDIHSSSAPKLFGFPLTEQEEFAERKYDVGESRKFRCHYCKRVFANSQALGGHQNAHKKERQRARRFQIHTHRRSIAIAAASSSAPVLTSHAIIRSSVVPPHPPSSVTVTVPSIYLRGGPPSPVPIFHPRQQLQSNLNTKHFPILIPSSTFHLTNAPCFPFQLYASPTVLQSAPTVPDFSSAEREFVDVHLKL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03440 197 Pfam C2H2-type zinc finger 39 64 - -
Pumo5g03440 197 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Pumo5g03440 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Pumo5g03440 197 PANTHER ZINC FINGER PROTEIN 5 9 157 IPR044299 GO:0010090
Pumo5g03440 197 Gene3D Classic Zinc Finger 22 95 - -
Pumo5g03440 197 FunFam Zinc finger protein 6 27 98 - -
Pumo5g03440 197 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03440 Pumo-Chr5 83675580 83676271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03440 9 135 C2H2 Transcription Factor Family AT1G68360 33.962 1.87e-18 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g03440 zf-C2H2_6 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03440 - - gmx:100806818 232.261