Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03433 ATGGCGACGAGAAATCGAACTGTAGAGTTCAGAAAACACAGAGACGCCGTGAAGAGCGTGCGCGCTCCTCTCTCCTCCTCAGCATCTGCTTCCACCGGTCCCGTCATCGAAATGGTCACCACTTCGCTTCTTCCTTCCAATCGATCCTCCTATGCTCCTCTCAGCACCCAGGAACCCGGTCCATCCACTTCTAGGGATGCTTTTACTGTGGGGTTGCCGCCATCTTGGGTGGATGATTCTGAAGAAATAGCTACCAATATACAACGTGCTAGGGTTAAAATTTCTGTGTTAACCAAAGCTCATGCGAAGGCTTTGATGCCTTCCTTTGGGGATGGGAAAGAGGATCAGCGTCTTATTGAGACTCTCACCCACGAAATTACGTCTCTCCTCAGAAAGTCTGAAGTCAGGCTCAAAAGACTTTCTGCTGCTGCTGGATCTTCTGAGGATTCTAATGTTAGAAAAAATGTACAGCGTTCCCTTGCTACAGACCTTCAGAACCTATCAATGGATCTCCGGCGAAAACAGTCAGCATATTTGAAACGTTTGCAGCAGCAACAAGAGGGTTATGATGGGGTTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGGATCGCATAATGATGAATTCAGTGACATGGTATGTTTATTTTGGCAACTAATTTCTCTGGCAGGGCCATATTATTTTAAGAAACCTTATGCCTGTGTTGTCAAATCAGTCCATGAACTTGCTCAAATCATGAAGGATCTCTCTGTCCTTGTGATAGACCAGGGGACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTTCTACATCCGTTGAAGAGGGTCTTAAGCAGTTGCAAAAGGAACAGATGATGAGACTATTATCGCAGACTAAGCCGCATGCAATTGATATTGGAGGTGTTGTTAGAGGAAGTGGTGAGATGTGA 936 0.4509 MATRNRTVEFRKHRDAVKSVRAPLSSSASASTGPVIEMVTTSLLPSNRSSYAPLSTQEPGPSTSRDAFTVGLPPSWVDDSEEIATNIQRARVKISVLTKAHAKALMPSFGDGKEDQRLIETLTHEITSLLRKSEVRLKRLSAAAGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQQEGYDGVDLEMNFNGSKFGSHNDEFSDMVCLFWQLISLAGPYYFKKPYACVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKEQMMRLLSQTKPHAIDIGGVVRGSGEM 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03433 311 Gene3D - 73 213 - -
Pumo5g03433 311 SUPERFAMILY t-snare proteins 72 278 IPR010989 GO:0016020|GO:0016192
Pumo5g03433 311 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 236 285 IPR000727 -
Pumo5g03433 311 Gene3D - 234 289 - -
Pumo5g03433 311 PANTHER SYNTAXIN 237 285 IPR045242 -
Pumo5g03433 311 FunFam Syntaxin-43 73 277 - -
Pumo5g03433 311 CDD SNARE_syntaxin16 236 284 - -
Pumo5g03433 311 SMART SynN_4 67 183 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03433 Pumo-Chr5 83502346 83506637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03433 1 284 SNARE and Associated Proteins AT3G05710 63.455 9.69e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03433 K08489 - gmx:100803629 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03433 5 83502346 83506637 Pumo5g03433 5 83502346 83506637 ECH
Pumo5g03433 5 83502346 83506637 Pumo3g02015 3 31370367 31375087 ECH