Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03429 ATGACCGCCGACACCCACGCCGCTCCTAATATCAATCCCAAGGGCCTCCTCTGCAATGCCGCCGCCGGTGCTTCCGCCGGGGTTATTGCTGCTACATTCGTGTGTCCTTTAGATGTCATCAAAACTAGGTTTCAGGTTCACGGTGTTCCGCAGCTCGCGCATGGAAGTGTTAAAGGCAGCATAATAGTTGCTAGCTTGGAACAAATATTTCACAAGGAGGGGTTACGTGGCATGTACCGTGGGCTCGCGCCCACTGTGTTGGCTTTACTTCCAAATTGGGCGGTTTATTTTAGTGCATATGAGCAGCTTAAGAGCCTTCTTCATTCTGATGAAGAAAGCCATCATCTTTCAATTGGAGCTAATATGATAGCTGCTTCTGGTGCTGGAGCTGCAACTACCATGTTTACAAATCCCCTTTGGGTTGTCAAGACTAGACTCCAAACCCAGGGAATGAGATCTGGTGTTGTGCCATATAGTGGCACACTATCTGCATTGAGGAGAATTGCACATGAGGAGGGCATTCGGGGGCTGTACAGTGGCCTTGTACCTGCTCTGGCTGGTATCAGTCATGTTGCCATCCAATTTCCTACATATGAGACAATAAAATTTTATTTGGCAAATCAAGATGACGCAGCAATGGATAAACTTGGTGCACGTGATGTTGCAATTGCATCATCAGTTTCCAAAATTTTTGCATCCACATTGACATATCCTCATGAGGTTGTACGTTCTAGACTGCAAGAACAAGGGCATCATTCGGAGAAACGGTACTCTGGTGTGATTGATTGTATTAGAAAGGTTTTTCAACAAGAAGGTGTACAGGGTTTTTACCGAGGTTGTGCCACCAACCTTCTGAGGACAACGCCAGCTGCTGTGATCACATTCACCAGCTTTGAAATGATACACCGATTTCTTGTTTCTCTTTTTCCTTCTGATCCACAGCCTCATATTTTGTGA 957 0.4598 MTADTHAAPNINPKGLLCNAAAGASAGVIAATFVCPLDVIKTRFQVHGVPQLAHGSVKGSIIVASLEQIFHKEGLRGMYRGLAPTVLALLPNWAVYFSAYEQLKSLLHSDEESHHLSIGANMIAASGAGAATTMFTNPLWVVKTRLQTQGMRSGVVPYSGTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYETIKFYLANQDDAAMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCIRKVFQQEGVQGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLFPSDPQPHIL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03429 318 Pfam Mitochondrial carrier protein 222 306 IPR018108 -
Pumo5g03429 318 Pfam Mitochondrial carrier protein 116 207 IPR018108 -
Pumo5g03429 318 Pfam Mitochondrial carrier protein 15 109 IPR018108 -
Pumo5g03429 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 304 IPR018108 -
Pumo5g03429 318 FunFam Mitochondrial nicotinamide adenine dinucleotide transporter 1 113 308 - -
Pumo5g03429 318 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 17 308 IPR044712 GO:0006862|GO:0055085
Pumo5g03429 318 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 2 112 - -
Pumo5g03429 318 Gene3D Mitochondrial carrier domain 2 110 IPR023395 -
Pumo5g03429 318 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085
Pumo5g03429 318 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085
Pumo5g03429 318 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Pumo5g03429 318 PRINTS Mitochondrial carrier protein signature 225 247 IPR002067 GO:0055085
Pumo5g03429 318 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Pumo5g03429 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 106 IPR018108 -
Pumo5g03429 318 SUPERFAMILY Mitochondrial carrier 15 300 IPR023395 -
Pumo5g03429 318 Gene3D Mitochondrial carrier domain 111 307 IPR023395 -
Pumo5g03429 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03429 Pumo-Chr5 83478651 83483206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03429 1 312 Chloroplast and Mitochondria Gene Families AT2G47490 75.321 4.63e-164 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03429 K15115 - gmx:100500213 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03429 5 83478651 83483206 Pumo5g03429 5 83478651 83483206 ECH