Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03426 ATGTCCGGCATCGTCGAGTCTAACGGTGCCGTTTGTTATTATTCAGTGCTTGGGATTGCCAAACATTCCACCGATGACGAAATTCGATGCGCTTATCGTAAGATGGCTCTGAAGTGGCATCCCGATAGGTGGATCAAGGATCCAAAGCTTGCACTAGAAGCCAAAAAACGATTTCAGCGCGTTCAAGAGGCTTATTCAGTTTTGTCCAATAAAGGGAAGAGAAAGATATATGATGCTGGCTTGTTTGGTCTGATTGGAGAGGACGATGACGAGGGATTTGTTGATTTCATGCAAGAAATGGTCTTGATGATGCAGAAAGTAAGACCAAAGGATGAGAAAGGCATGATGGAGGATCTTCAAGGGTTGTTAATCGATATGATGGCAGATAATGAAGGGATGGGAAAGTCTGGGTTAAGCTGGAATTCATCTCCATGTCCTACAAAAAGGACACGTATCTTATGA 462 0.4351 MSGIVESNGAVCYYSVLGIAKHSTDDEIRCAYRKMALKWHPDRWIKDPKLALEAKKRFQRVQEAYSVLSNKGKRKIYDAGLFGLIGEDDDEGFVDFMQEMVLMMQKVRPKDEKGMMEDLQGLLIDMMADNEGMGKSGLSWNSSPCPTKRTRIL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03426 153 PANTHER PUTATIVE, EXPRESSED-RELATED 9 134 - -
Pumo5g03426 153 SMART dnaj_3 11 73 IPR001623 -
Pumo5g03426 153 SUPERFAMILY Chaperone J-domain 10 100 IPR036869 -
Pumo5g03426 153 PRINTS DnaJ domain signature 14 32 IPR001623 -
Pumo5g03426 153 PRINTS DnaJ domain signature 32 47 IPR001623 -
Pumo5g03426 153 PRINTS DnaJ domain signature 53 73 IPR001623 -
Pumo5g03426 153 Gene3D DnaJ domain 5 91 IPR036869 -
Pumo5g03426 153 Pfam DnaJ domain 13 78 IPR001623 -
Pumo5g03426 153 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Pumo5g03426 153 CDD DnaJ 12 70 IPR001623 -
Pumo5g03426 153 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03426 Pumo-Chr5 83449245 83450404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03426 12 79 C2H2 Transcription Factor Family AT1G74250 47.826 1.71e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03426 - - gmx:100794942 288.5