LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g03423	ATGGTTTCGCTGAAACTGCAGAAGCGGCTCGCCGCAAGCGTCCTCAAGTGCGGCAGAGGAAAGGTTTGGCTTGACCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGAAGTCGCGTTATTGACCAACAAAATTATCAGAAAAAAGAGCAAACAAGCCAACCACGCGACGTCGACAACCTTCGTGGTTCTTCCAGCGACCACGGCTGTTCTCCGACCACGGCTGCGAGTGGGTTCTCCGGCCACGGCTGTTCGAGACGTCGTCCCCTGCACGAGTGGGGCGAGTTCTTTTTTCGGCAAGTGGGTGTCTCCCTACACGCGGTGGTTCTGCGCGTTTTCCGACAAGGGGCTTCTCCGACCACAGCGGTTCTGGACGTCTTCCCGTGCAAGAGTGGGGCAAGTTCATTTTCCGGTGAGTGGGTGTCTCCCTACACGCAGTGGTTTTGCGCGTTTTCCGTGGTGGTTCTGCGTTTTTTCCGGCGAGCTGGTTCTCCGACCACGGCGATTTTGGACGTCGTCCCCTGCACGAGTGGGGCGAGTTCATTTTATGGCAAGTGGGTGTCTCCCTACACGCAGTGGTTCTGTGCATTTTCCGTGGTGGTTTTGTGCGTTTTCCAGCGACGGGGTCTTTCCTTCCGGCAAAGCAACATCTCCACTACATCTGTGGTTCATTTATTCTCTTTGATAGCACTGGGTCACCTTTTCCAGGTTCGTTGTCTCTGTTTTTAG	732	0.5451	MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRSRVIDQQNYQKKEQTSQPRDVDNLRGSSSDHGCSPTTAASGFSGHGCSRRRPLHEWGEFFFRQVGVSLHAVVLRVFRQGASPTTAVLDVFPCKSGASSFSGEWVSPYTQWFCAFSVVVLRFFRRAGSPTTAILDVVPCTSGASSFYGKWVSPYTQWFCAFSVVVLCVFQRRGLSFRQSNISTTSVVHLFSLIALGHLFQVRCLCF	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g03423	243	FunFam	Ribosomal protein L19	1	53	-	-
	Pumo5g03423	243	PANTHER	60S RIBOSOMAL PROTEIN L19	1	41	IPR039547	GO:0003723\|GO:0003735\|GO:0022625
	Pumo5g03423	243	Gene3D	-	2	62	IPR015972	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g03423	243	MobiDBLite	consensus disorder prediction	40	84	-	-
	Pumo5g03423	243	Pfam	Ribosomal protein L19e	4	42	IPR000196	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g03423	243	SMART	Ribosomal_L19e_2	3	117	IPR000196	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g03423	243	SUPERFAMILY	Ribosomal protein L19 (L19e)	3	43	IPR035970	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g03423	243	ProSitePatterns	Ribosomal protein L19e signature.	7	26	IPR023638	-
	Pumo5g03423	243	MobiDBLite	consensus disorder prediction	40	81	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g03423	Pumo-Chr5	83387583	83402142	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo5g03423	1	41	Cytoplasmic Ribosomal Protein Gene Family	AT1G02780	80.488	9.91e-17	74.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g03423	K02885		-	mus:103998497	79.7221