Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03422 ATGTGTGGCGGAGCAATCATCGCAGAGTTCATCCCTCGTCACCGCTCCCGCAGCCTCACAGCCTCCGAACTCTGGCCCAAGCCCAACGAATCACACGAATGTTCTCACCCTCAGCAACAACCAGAGTCATCACCCCAACCTCCCCCAGTGAAGAGGCAGAGGAAAAACCTCTACAGAGGGATCAGGCAGCGGCCCTGGGGCAAATGGGCCGCGGAGATTCGGGATCCACGAAAAGGTGTCCGTGTCTGGCTCGGCACCTTCAACACCGCCGAAGAAGCCGCCAGAGCCTACGACAAAGAAGCCCGAAAAATCCGCGGCAAAAAGGCCAAAGTCAATTTCCCCAACGGGGATGACCACTTCTCCATGCAACCTCCTGCTGATCCTCTACCGCCCCTCTATGATCAACCACAATACGGATGCAAGAGCCTCAACTTGGAGTTCGGTTACGATCTCAACCAAACAGGGGCTTTCCCTCCTAACGCTGCTATCAACACAGATCCAGTGTTGGGTTACGCTGATGAGAATTGCGGGTCCTACTCCGTAACGGAAAATGAAGAGGCAAGGAACAAAGTGGATAAGGTTTCGGAGGAGTTGATGGCTTACGAGAACTACATGAGGTTTTATCAGATTCCTTTCTATGATGCCCAATCGGCTCCGTCTACGGTTCAGGAAAACTTGGTTGGAGATTTCTGGGCCTTCGATGCTCCTGAGGCCTCTCCATCTCTCTGA 729 0.5364 MCGGAIIAEFIPRHRSRSLTASELWPKPNESHECSHPQQQPESSPQPPPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNGDDHFSMQPPADPLPPLYDQPQYGCKSLNLEFGYDLNQTGAFPPNAAINTDPVLGYADENCGSYSVTENEEARNKVDKVSEELMAYENYMRFYQIPFYDAQSAPSTVQENLVGDFWAFDAPEASPSL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03422 242 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Pumo5g03422 242 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Pumo5g03422 242 MobiDBLite consensus disorder prediction 21 53 - -
Pumo5g03422 242 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Pumo5g03422 242 Coils Coil 184 204 - -
Pumo5g03422 242 PANTHER DNA-BINDING DOMAIN 36 174 IPR044808 GO:0003700|GO:0009873
Pumo5g03422 242 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Pumo5g03422 242 CDD AP2 58 115 IPR001471 GO:0003700|GO:0006355
Pumo5g03422 242 Pfam AP2 domain 58 106 IPR001471 GO:0003700|GO:0006355
Pumo5g03422 242 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Pumo5g03422 242 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Pumo5g03422 242 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03422 Pumo-Chr5 83379133 83380280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03422 1 233 AP2-EREBP Transcription Factor Family AT2G47520 42.918 5.24e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g03422 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03422 K09286 - gmx:100527371 292.737