Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03416 ATGCTGTCTCACGTACCCACCATAACCATTCTGTCTGCGGTTTTTGTTCTACTCTTTTCTTCGGTAACCCATTTCAGCACCACCGCAAAAGCAACAAGAACCCCTCAAGAAACTACCCTCCATTTGCAAGTAGCAAACTCCACATGCGAGGGAACACTCTACCCCGTCCTCTGCGTCTCAACCCTCGCCTCCTTCCCAGACCTTACCTCAAAAACCGTTCCACAAATGATATGTTCTGTCGTAAACCACACCATATACGAGGTCACATTGTCCTCCTCCAACTGCAGCGGCCTCAAAAAGAACCTCCCTAAACTCAACAAACTCGAACAGAGAGCCCTCGACGACTGTCTCAATCTCTTCGACGTCACCATCGCGGAGCTCAACACCACCATCAAGGATCTCTCACAGACCACAATAGGGTCGAAGCGCTACCACGACTCGCAGACTCTGCTGAGCGGCGCGATGACCAACTTGTACACGTGTCTGGATGGCTTTGCCTACAGCAAAGGGCACGTGAGGGACAGGATCCAGGAGGGCCTGTTGGAGATTTCGCATCACGTGAGTAACTCGCTGGCAATGCTGAAGAAATTGCCCGGAGTGAAGAAAGCGTCAAAGAATGAGGCTTTCCCAGAATATGGTAAGATGAAAGATGGGTTCCCGTCGTGGGTATCCCGCAAGGATAGAAAATTGCTTCAAGCTGCTGTGAATGAAACCAAGTTCGATCTTGTTGTGGCCAAAGACGGCACTGGCAACTTCACCACTATAGGGGAAGCAGTGGCTGCGGCTCCAAACTCCAGCGCAACTAGGCAATATAGATTTGTGATACACATAAAAGCTGGGGCGTACTTCGAGAATGTGGAGGTAATCAAGAAGAAGACCAATCTGATGTTCGTCGGAGATGGAATTGGAAAGACTGTTGTCAAGGCCAGTAGGAATGTTGTCGACGGCTGGACCACTTTCCGATCAGCCACTGTCGCTGTGGTTGGAGACGGATTCATAGCAAAGGGAATAACCTTTGAGAACTCAGCTGGGCCCAGCAAACACCAAGCCGTGGCCCTAAGGAGCGGTGCTGACTTGTCAGCCTTCTACAAATGCAGCTTCGTTGCCTACCAAGACACTCTATACGTCCACTCCTTACGTCAATTCTACCGCGATTGCGACATTTACGGCACCGTCGACTTCATCTTTGGCAATGCAGCAGCAGTGCTCCAGAACTGCAACTTGTACGCACGCAAGCCCAATGAAAACCAGAAGAATTTGTTCACGGCACAAGGCAGAGAAGACCCTAACCAAAACACCGGCATTTCCGTCATAAATAGCAAGGTTGCAGCCGCTGCTGATTTGATCCCGGTCAAGTCTCAGTTCAAGAATTACTTGGGTCGGCCTTGGAAAATGTATTCGAGAACTGTTTTTCTGAATTCTTACATGGAGGATCTGATAGACCCGAAAGGGTGGTTGGAATGGGATGGCACGTTTGCATTGGATACGTTGTATTATGGAGAGTATAACAATAGGGGTCCCGGTTCAAATACAAGTGGCAGAGTTACGTGGCCTGGTTATAGGGTTATCAAGAACGCCACTGAGGCTAGCCAGTTCACAGTTCGCAATTTCATTCAGGGGAATGAATGGTTGAACTCCACCGACATTCCATTCTTCTCTGATTTGAGTTGA 1671 0.4925 MLSHVPTITILSAVFVLLFSSVTHFSTTAKATRTPQETTLHLQVANSTCEGTLYPVLCVSTLASFPDLTSKTVPQMICSVVNHTIYEVTLSSSNCSGLKKNLPKLNKLEQRALDDCLNLFDVTIAELNTTIKDLSQTTIGSKRYHDSQTLLSGAMTNLYTCLDGFAYSKGHVRDRIQEGLLEISHHVSNSLAMLKKLPGVKKASKNEAFPEYGKMKDGFPSWVSRKDRKLLQAAVNETKFDLVVAKDGTGNFTTIGEAVAAAPNSSATRQYRFVIHIKAGAYFENVEVIKKKTNLMFVGDGIGKTVVKASRNVVDGWTTFRSATVAVVGDGFIAKGITFENSAGPSKHQAVALRSGADLSAFYKCSFVAYQDTLYVHSLRQFYRDCDIYGTVDFIFGNAAAVLQNCNLYARKPNENQKNLFTAQGREDPNQNTGISVINSKVAAAADLIPVKSQFKNYLGRPWKMYSRTVFLNSYMEDLIDPKGWLEWDGTFALDTLYYGEYNNRGPGSNTSGRVTWPGYRVIKNATEASQFTVRNFIQGNEWLNSTDIPFFSDLS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03416 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 198 IPR035513 -
Pumo5g03416 556 FunFam Pectinesterase 235 555 - -
Pumo5g03416 556 CDD PMEI-like_3 47 199 - -
Pumo5g03416 556 Pfam Plant invertase/pectin methylesterase inhibitor 46 193 IPR006501 GO:0004857
Pumo5g03416 556 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Pumo5g03416 556 NCBIfam pectinesterase inhibitor domain 12 197 IPR006501 GO:0004857
Pumo5g03416 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 198 IPR035513 -
Pumo5g03416 556 PANTHER PECTINESTERASE 19 545 - -
Pumo5g03416 556 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Pumo5g03416 556 Gene3D - 235 555 IPR012334 -
Pumo5g03416 556 Pfam Pectinesterase 241 541 IPR000070 GO:0030599|GO:0042545
Pumo5g03416 556 SMART PMEI_2 40 193 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03416 Pumo-Chr5 83295714 83301643 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03416 69 555 Carbohydrate Esterase AT4G02320 56.375 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03416 K01051 - gmx:100813592 986.482