Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03414 ATGATAAGAAGCTTCACAGTGTTTCCCTTGACTTGTTCACGAAAGGTTGGGGGCCATGAGAAGAAAATCTCAAGGCAAAGCAATGGGAGGCATCTGGGTTTCCGCAATGGTCGTTTACCATTGAAGATGTCAAACCGTGTGCGTGCCATTTATGATTCTGCTAGAGGTCACGGGAGAAAACTGCTTCAAGATAACAGCCAAAGTGTGTTGGTTAATGACATTGTGGTTGTTAGCCAGGATGGAAGCGGGAACTTCACCACTATCAACGATGCCATAGCAGCTGCGCCAAATAACACAGCTGCTAGTGATGGCTATTTTCTAATCTTTGTCACTCAAGGTTTGTACCAAGAATATATATCCATTGCCAAAAACAAAAAGAACTTGATGATGGTTGGAGATGGGATCAATCAAACGATTATCACCGGTGATCACAATGTTGTCGATAACTTCACAACATTCAACTCAGCAACATTTGCTGTGGTAGCACAAGGGTTCGTAGCAGTTAACATAACATTCCGAAACACTGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTGAGAAACGGAGCTGACATGTCCACCTTCTACAGCTGCAGCTTTGAAGGGTATCAAGACACTTTGTACACGCATTCCCTTAGACAGTTCTACCGTGAATGTGACATCTATGGCACCGTTGACTTCATATTTGGAAATGCCGCTGTTGTTTTCCAAACATGTAACCTATATCCCCGCCTTCCCATGAGTGGACAATTCAACGCCATCACTGCACAAGGCAGAACAGACCCAAATCAAAACACAGGCACTTCCATACACAACGCCACAATAAAACCCGCTGCTGATTTGGCTCCTTCTGTTGGTACCGTGAAAACATACCTCGGGAGACCATGGAAAGAGTACTCAAGAACGGTTTATATGCAGTCTTTCATGGATAGTTTCATAAATCCTTCTGGCTGGAGTGAATGGAGTGGGGATTTTGCCCTAAGCACCTTGTACTATGCAGAGTACAATAACACGGGACCTGGTTCGAACACCACAAACCGAGTGACGTGGCCTGGTTACCATGTTATCAATGCTACTGATGCGGCTAATTTTACTGTGTCTAACTTCTTGGACGGAGATGACTGGCTGCCTCTAACCGGAGTTCCATATTTGAGTGGATTGATATAG 1167 0.4499 MIRSFTVFPLTCSRKVGGHEKKISRQSNGRHLGFRNGRLPLKMSNRVRAIYDSARGHGRKLLQDNSQSVLVNDIVVVSQDGSGNFTTINDAIAAAPNNTAASDGYFLIFVTQGLYQEYISIAKNKKNLMMVGDGINQTIITGDHNVVDNFTTFNSATFAVVAQGFVAVNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQTCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNATIKPAADLAPSVGTVKTYLGRPWKEYSRTVYMQSFMDSFINPSGWSEWSGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINATDAANFTVSNFLDGDDWLPLTGVPYLSGLI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03414 388 ProSitePatterns Pectinesterase signature 2. 221 230 IPR033131 -
Pumo5g03414 388 PANTHER PECTINESTERASE 59 377 - -
Pumo5g03414 388 Gene3D - 73 388 IPR012334 -
Pumo5g03414 388 Pfam Pectinesterase 75 373 IPR000070 GO:0030599|GO:0042545
Pumo5g03414 388 FunFam Pectinesterase 68 387 - -
Pumo5g03414 388 SUPERFAMILY Pectin lyase-like 71 386 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03414 Pumo-Chr5 83240246 83242268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03414 34 388 Carbohydrate Esterase AT1G02810 73.757 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03414 K01051 - gmx:100813051 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03414 5 83240246 83242268 Pumo3g02223 3 34066654 34072796 PCT