Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03413 ATGGCTATGGCTTTCAACAATTTGTTCGTTCTTACGCTCTGTATTTCCCTTGTGTTATCCTTCTTGACATCGATTTCCATAGCTGATAATAACCATGCAGTCGTTCCACCAGAAACCATATGCTACTCAACCTTAGACCCTTCTTACTGCAAATTTGTGCTTGCAAATCAAAATGGTAGCATATATGACTATTGCCGCATTTCTGTTCGAAAGTCCTTGTCTCAGTCTCTTAAATTCTTGAGCATGATGTATTCATATCTTAAAAATCCCTCGTCTTTCTCTCAACCCACAATTCGTGCTCTTGAAGATTGTCAATTCCTTGCTGAACTAAACTTCGAATACTTATCAACAACCCATGACACTGTTGATAAAGCCAGCGATGTTCTTCCCACCTCTCAAACAGACGATGTTCACACATTGCTTAGTGCTGTTTTGACAAATCAACAAACTTGCTTAGACGGCCTACAAACTTCAGCTTTAGATCCAAAAGTGAAGAATGATCTTTCTTCCCAACTCTCGAATGATACAAAGCTTGACAGTGTCTCGCTTTATTTGTTCACCAAGGCTTGGGCTTCTGAGAACAAAACTTCAACATCATGGCAACACCACGGGGGAATCCAGAATGATCGTTTACCCTTGAAGATGTCAAACAAAGTACGTGCCATTTATGATTCCGCTAGAGGCCAGGGGAGAAAACTACTTCAAACAATGGATGATGACAATGAAAGCGTTCTGGTTAACGATATTGTGGTGGTTAGTAAAGATGGAAGCGGAAACTTTACCACTATCAATGATGCCATAGCTGCTGCACCAAATAACACAGCTGCTACCGATGGCTACTTCATTATTTTCATCACCGAGGGTGTATATCAAGAGTATGTATCTATAGCCAAAAACAAGAAGTTCTTGATGCTAATTGGAGATGGAATCAATCGGACAATCATCACTGGCGATCACAACGTTATAGTTGGCTTTACAACATTCAACTCGGCCACATTTGCTGTGGTAGCACAAGGATTTGTAGCAATGAACATAACATTCCGCAACACTGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTAAGAAATGGAGCAGATATGTCCACCTTCTATAGCTGTAGCTTTGAAGGGTACCAAGACACTTTATACACGCATTCACTAAGGCAGTTTTATCGTGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAATGGAGCTGTTGTTTTGCAAAACTGCAACATGTATCCCCGCCTCCCAATGAGTGGACAATTCAATGCCATCACTGCACAAGGTCGAACTGATCCAAATCAAAACACTGGAATTTCCATACAAAATGCAACCATAAAAGCAGCACAGGATTTAGCTCCCATGGTTGGTACTGTGGAAACATACCTTGGGAGGCCATGGAAGGAGTACTCAAGGACTGTTTATATGCAGTCTTTCATGGATAGTTTGATAGCTCCTGCTGGTTGGCATGAATGGAATGGGAATTTTGCACTGAGCACCTTGTACTATGCAGAGTATGATAACATGGGTCCTGGTTCAAATACTGCCAACCGAGTGAACTGGCCTGGCTATCATGTTATCAATGCTACTGATGCAGTTAATTTTACTGTGTCTAACTTCTTAGATGGGGATGATTGGGTGCCTCAAACTAGCGTTCCTTATCAGGCTTCTTTGTAA 1689 0.4162 MAMAFNNLFVLTLCISLVLSFLTSISIADNNHAVVPPETICYSTLDPSYCKFVLANQNGSIYDYCRISVRKSLSQSLKFLSMMYSYLKNPSSFSQPTIRALEDCQFLAELNFEYLSTTHDTVDKASDVLPTSQTDDVHTLLSAVLTNQQTCLDGLQTSALDPKVKNDLSSQLSNDTKLDSVSLYLFTKAWASENKTSTSWQHHGGIQNDRLPLKMSNKVRAIYDSARGQGRKLLQTMDDDNESVLVNDIVVVSKDGSGNFTTINDAIAAAPNNTAATDGYFIIFITEGVYQEYVSIAKNKKFLMLIGDGINRTIITGDHNVIVGFTTFNSATFAVVAQGFVAMNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNGAVVLQNCNMYPRLPMSGQFNAITAQGRTDPNQNTGISIQNATIKAAQDLAPMVGTVETYLGRPWKEYSRTVYMQSFMDSLIAPAGWHEWNGNFALSTLYYAEYDNMGPGSNTANRVNWPGYHVINATDAVNFTVSNFLDGDDWVPQTSVPYQASL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03413 562 Gene3D - 244 562 IPR012334 -
Pumo5g03413 562 Pfam Plant invertase/pectin methylesterase inhibitor 38 182 IPR006501 GO:0004857
Pumo5g03413 562 CDD PMEI-like_3 39 191 - -
Pumo5g03413 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
Pumo5g03413 562 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Pumo5g03413 562 FunFam Pectinesterase 38 188 - -
Pumo5g03413 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 188 IPR035513 -
Pumo5g03413 562 Pfam Pectinesterase 250 548 IPR000070 GO:0030599|GO:0042545
Pumo5g03413 562 SUPERFAMILY Pectin lyase-like 247 559 IPR011050 -
Pumo5g03413 562 SMART PMEI_2 32 185 IPR006501 GO:0004857
Pumo5g03413 562 FunFam Pectinesterase 243 562 - -
Pumo5g03413 562 PANTHER PECTINESTERASE 23 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03413 Pumo-Chr5 83235764 83237589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03413 8 562 Carbohydrate Esterase AT4G02330 57.766 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03413 K01051 - gmx:100792847 1014.99