Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03412 ATGCACCCTACCAAGAAACAACTCGGATTCAAAAACGGGCGTTTGCCGCTTAAGATGTCGAGCAGAACCCGCGCGATCTACGAGTCCGTGAGCAGGAGGAAGCTCCTTCAGATTAATGCCACGGTGGGCGACGAGGTTGTGGTGAGGGATATTGTGACGGTGAGCCAGGATGGAAGCGGGAACTTCACCACTATCAACGATGCCATTGCCGCGGCTCCTAACAAATCTGTCTCCACCGATGGGTACTTCCTTATCTATGTCACTGCCGGTCTGTACGACGAAAATGTCTCCATTGATAAGAAGAAGACGTATTTGATGATGGTTGGGGACGGTATCAACAAGACAATTATCACTGGCAATCGTAGCGTCGTCGATGGCTGGACAACCTTCAGCTCCGCAACATTTGCTGTGGTTGGGCAAGGATTCGTGGGTGTGAACATGACCATCCGCAACACCGCCGGGGCCGTGAAGCACCAAGCAGTAGCCCTTCGAAACGGAGCAGATCTGTCCACGTTTTACAGCTGCAGCTTCGAAGGGTACCAAGACACATTATACGTACACTCCCTGAGACAATTCTACCGGGAATGCGACATCTACGGAACAGTAGATTTCATATTCGGAAACGCTAAGGTTGTGTTCCAAAATTGCAACATGTACCCTCGTCTCCCCATGAGCGGTCAATTCAACGCGATCACCGCACAAGGAAGAACAGACCCAAACCAAGACACTGGAATTTCAATCCACAACTGTACCGTTAGAGCAGCTGATGATTTGGCTGCCAGCAACGGCGTTGCAACGTATTTGGGAAGGCCATGGAAGGAGTATTCTAGAACGGTTTTTATGCAAACTTTTATGGACAGTGTGATCAACGCTGCGGGGTGGCGTGAATGGAACGGTGATTTTGCATTAAGCACTTTGTATTACGCAGAGTACAGAAACAGTGGGCCAGGGTCTGGCACCGATAATAGAGTGACGTGGCCCGGTTTTCAAGTGATTAATGCCACGGATGCAGCTAACTTTACTGTGTCCAATTTTTTGCTTGGAGATGATTGGTTACCCCAGACAGGAGTGAGTTACACCAATAACTTGATATAG 1095 0.4932 MHPTKKQLGFKNGRLPLKMSSRTRAIYESVSRRKLLQINATVGDEVVVRDIVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGLYDENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFSSATFAVVGQGFVGVNMTIRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAKVVFQNCNMYPRLPMSGQFNAITAQGRTDPNQDTGISIHNCTVRAADDLAASNGVATYLGRPWKEYSRTVFMQTFMDSVINAAGWREWNGDFALSTLYYAEYRNSGPGSGTDNRVTWPGFQVINATDAANFTVSNFLLGDDWLPQTGVSYTNNLI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03412 364 FunFam Pectinesterase 45 363 - -
Pumo5g03412 364 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Pumo5g03412 364 SUPERFAMILY Pectin lyase-like 48 361 IPR011050 -
Pumo5g03412 364 PANTHER PECTINESTERASE 33 353 - -
Pumo5g03412 364 Gene3D - 46 363 IPR012334 -
Pumo5g03412 364 Pfam Pectinesterase 52 349 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03412 Pumo-Chr5 83208360 83211026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03412 2 364 Carbohydrate Esterase AT4G02330 69.730 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03412 K01051 - gmx:100800971 705.286