Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo5g03410 | ATGATAATTAAGCGGAGTATGAAAACCGCAATACCGAAGCGGAAGAAACAGTGTAAGCCAGAGAACTGCGAGAATTCCGCGATTCAGAAGAAGCAGAGAGTAAATGAGGTTTATTCTGCTGAAGGAGGAGCCTCTGGATCCAGTGAGGTGCAGTCCAATTCAAATTCCGTGGACTCGAATGGCACAATTCAAGAGTTGACCCCCCAATCAGAAGAAGGGATTCGACCTCGGTCTTCCAGAGGTCGAGCTAAGAAGCTTCCCTGCAGGTTCAGTGATTCTGTTTTCTATGAAGGCTTTGGGTTTGAAGACGACAATAAGAGTGCTTTAGAAGACGTTGCTGACAAGAGAAATGAAAGAGATTCTCCTTGTTCTCCATATTCTGCTGAGTTGGGAGATTTTGAGTACTCGGTTAAGACGGTTAAAAAGACGGTTAATGGGGGTCGTTCGTTATTGGTTAAAGAAAAGAGTAATAGTTCCAATGCTGAGGGTGTGGATGGAAATGGTAAAAAGAAAGACATTTACGAATTAGATGAGTTTGTTTTGGGTGATATAGTTTGGGCAAGATGTGGGAAGAAGCATCCTCCTTGGCCTGCTGTAGTCATTGATCCCCTCTTGCAAGCTCCCGAATCCGTCTTAAGCTGTTGTGTTCCTGGTGCACTTTGCGTTATGTTTTTTGGCTATTCCAAAAATGGAAAGCAAAGGGACTATGCGTGGGTAAAGCCGGGAATGATATTCCCGTTCTTGGAATTCATGGACAGATTCCCGGGGCAGACCCAATTGTACAAAAGTAAAGCGAGTGACTTTCACATGGCAATGGAGGAGGCAGTGTTGGCTGAAAACGGCTTTTTGGACTTACACTTGGGAGCTGAGCAAACTATGGAGGGTGCGGATTCTTGTGTTGACCAGGAATATGCCTATCAAGACCAGGATACAATATCTTGTGCTGGCTGTGGTTTGATGTTGCCATGCAAAACCAGGAAGAAGATTAAGGATTCAAGTTGTGCTCCTCAGCACTATTGCAAGCCCTGTGCAAAGTTAATAAAATCGAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACTTATCAAGGATCTGGAAAATATGGATTACTATTGCCCTGATTGTAAATTATCAACATCACAAACATACAAGTCAAAAATTATATCAATGGAGAATAGCCAAAAACCTGTATTACCTGAAAATCTAGTGGTGGTATGCAATGGCATGGAAGGAATCTATATACCAAAGGATCATTTGGTTATGTGCAAGTGTGGCTTGTGTGGTTCAAGGACGCATAAACTTACTGAATGGGAAAGACATGCAGGTTGCAAAGCCAAAAAATGGAAATATAGTGTGAAAGTAGAAAGCACAATGCAACCGCTAAAAGAATGGATCGATGAACACAATTCCCCAGCTGGAACTCCCCTGCAGTTAGATCAGCAACAAATACTCTACTTTTTGCAAGAGAAGTATGAACCAGTTTATGCAACATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATCATCTGTAACAGGTGCCAAATTGCTGTCCACCAAGAATGCTATGGCGCAAAGAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGCCTGTGAAACTCCTGATGTTGAGAGACAGTGTTGCCTCTGCCCAGTAAAAGGTGGGGCTCTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTCACATGCGCTTGGTTTCGGCCTGAAGTTCTTTTCCAAAATGACGAGGCAATGGAACCAGCCTCTGGAATCCTCAAGATTCCTCCTAATTCCTTTTCAAAGACTTGCGTGATCTGTAACCAAAGCCACGGTTCCTGTATAAGTTGTTGCAAGTGTGCTACATATTTTCATGTAATGTGCGCGTCAAGAATGGGATATAGCATGGAATTGCATTCGACAGAAAAGAACGGGACTCTAATAACGAAGATGCTAATATATTGTGCAAATCACAGGGTCCCAAGCTCAGATTCAGGTCTGGTTGTACATACACCCATGGAGATATTCTCACCGACAACATCGCTTAAAAATCACCCGGGGTGCTTCAGGGGATCAAGGCTGGTTTCATCAAAGAATGTAGAACTTCTTGAACCTTCAAACCGTGAAATTTATGAGATTGAGCCACTGTCTGCTGCCAGATGTCGTGTGTACAAAAGGTCTTCCAGTAAGAAGGATGAAGTGCCAATAATTCACTTGCTTGGGGGGCCAAACCTTCATTCTTTAAGAGCAATAACTCAATTGAACAGCAATAAGGATGCTCAAGTATTTTCTTCTCTTAAGGAACGTCTTCACGATTTACAGAAAACAGAAAACGAAAGAGTTTGCTTAGGAAAATCAGGTATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTACGAGGTAGCATTACTGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGATTGTTATTTCTTCAAGATTAGTGAGGAAGTGGTGATTGACGCAACGGATAAGGGCAATATTGCACGTTTAATAAACCACTCTTGCATGCCAAACTGCTTTGCAAGGATTATGCCTTTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGGCCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTACTCGTTCGATGATGAGTGGGATGAAGAAAAGGTTGTCTGTCGCTGTAAAGCCCCTAACTGTAGGCAATATATGAACTAG | 2877 | 0.4261 | MIIKRSMKTAIPKRKKQCKPENCENSAIQKKQRVNEVYSAEGGASGSSEVQSNSNSVDSNGTIQELTPQSEEGIRPRSSRGRAKKLPCRFSDSVFYEGFGFEDDNKSALEDVADKRNERDSPCSPYSAELGDFEYSVKTVKKTVNGGRSLLVKEKSNSSNAEGVDGNGKKKDIYELDEFVLGDIVWARCGKKHPPWPAVVIDPLLQAPESVLSCCVPGALCVMFFGYSKNGKQRDYAWVKPGMIFPFLEFMDRFPGQTQLYKSKASDFHMAMEEAVLAENGFLDLHLGAEQTMEGADSCVDQEYAYQDQDTISCAGCGLMLPCKTRKKIKDSSCAPQHYCKPCAKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLIKDLENMDYYCPDCKLSTSQTYKSKIISMENSQKPVLPENLVVVCNGMEGIYIPKDHLVMCKCGLCGSRTHKLTEWERHAGCKAKKWKYSVKVESTMQPLKEWIDEHNSPAGTPLQLDQQQILYFLQEKYEPVYATWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRACETPDVERQCCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVLFQNDEAMEPASGILKIPPNSFSKTCVICNQSHGSCISCCKCATYFHVMCASRMGYSMELHSTEKNGTLITKMLIYCANHRVPSSDSGLVVHTPMEIFSPTTSLKNHPGCFRGSRLVSSKNVELLEPSNREIYEIEPLSAARCRVYKRSSSKKDEVPIIHLLGGPNLHSLRAITQLNSNKDAQVFSSLKERLHDLQKTENERVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRGSITDLREAKYRSEGKDCYFFKISEEVVIDATDKGNIARLINHSCMPNCFARIMPLGDQESRIVLIAKANVSAGEELTYNYSFDDEWDEEKVVCRCKAPNCRQYMN | 958 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo5g03410 | 958 | SMART | PostSET_3 | 942 | 958 | IPR003616 | - | |
| Pumo5g03410 | 958 | SMART | set_7 | 817 | 940 | IPR001214 | GO:0005515 | |
| Pumo5g03410 | 958 | Pfam | SET domain | 828 | 933 | IPR001214 | GO:0005515 | |
| Pumo5g03410 | 958 | ProSiteProfiles | SET domain profile. | 817 | 934 | IPR001214 | GO:0005515 | |
| Pumo5g03410 | 958 | Pfam | PHD-finger | 543 | 577 | - | - | |
| Pumo5g03410 | 958 | SUPERFAMILY | FYVE/PHD zinc finger | 350 | 409 | IPR011011 | - | |
| Pumo5g03410 | 958 | ProSiteProfiles | Zinc finger PHD-type profile. | 350 | 406 | IPR019787 | - | |
| Pumo5g03410 | 958 | Pfam | PHD-finger | 352 | 404 | IPR019787 | - | |
| Pumo5g03410 | 958 | Gene3D | SET domain | 750 | 958 | IPR046341 | - | |
| Pumo5g03410 | 958 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 345 | 412 | IPR013083 | - | |
| Pumo5g03410 | 958 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
| Pumo5g03410 | 958 | MobiDBLite | consensus disorder prediction | 41 | 74 | - | - | |
| Pumo5g03410 | 958 | ProSiteProfiles | PWWP domain profile. | 181 | 250 | IPR000313 | - | |
| Pumo5g03410 | 958 | SUPERFAMILY | FYVE/PHD zinc finger | 528 | 593 | IPR011011 | - | |
| Pumo5g03410 | 958 | CDD | PHD_ATX3_4_5_like | 530 | 576 | IPR042011 | - | |
| Pumo5g03410 | 958 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 6 | 958 | IPR025780 | - | |
| Pumo5g03410 | 958 | FunFam | Histone-lysine N-methyltransferase | 791 | 958 | - | - | |
| Pumo5g03410 | 958 | Gene3D | - | 173 | 280 | - | - | |
| Pumo5g03410 | 958 | ProSiteProfiles | Zinc finger PHD-type profile. | 528 | 579 | IPR019787 | - | |
| Pumo5g03410 | 958 | CDD | SET_SETD1-like | 806 | 954 | - | - | |
| Pumo5g03410 | 958 | FunFam | Histone-lysine N-methyltransferase | 580 | 699 | - | - | |
| Pumo5g03410 | 958 | Pfam | PHD-zinc-finger like domain | 584 | 696 | - | - | |
| Pumo5g03410 | 958 | ProSiteProfiles | Post-SET domain profile. | 942 | 958 | IPR003616 | - | |
| Pumo5g03410 | 958 | SMART | PHD_3 | 352 | 404 | IPR001965 | - | |
| Pumo5g03410 | 958 | SMART | PHD_3 | 530 | 577 | IPR001965 | - | |
| Pumo5g03410 | 958 | SMART | PHD_3 | 641 | 697 | IPR001965 | - | |
| Pumo5g03410 | 958 | PANTHER | PHD FINGER PROTEINS | 46 | 417 | - | - | |
| Pumo5g03410 | 958 | SUPERFAMILY | SET domain | 810 | 958 | IPR046341 | - | |
| Pumo5g03410 | 958 | CDD | PHD_TCF19_like | 353 | 403 | - | - | |
| Pumo5g03410 | 958 | Pfam | PWWP domain | 182 | 276 | IPR000313 | - | |
| Pumo5g03410 | 958 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 525 | 579 | IPR013083 | - | |
| Pumo5g03410 | 958 | SUPERFAMILY | Tudor/PWWP/MBT | 177 | 280 | - | - | |
| Pumo5g03410 | 958 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 580 | 698 | IPR013083 | - | |
| Pumo5g03410 | 958 | ProSitePatterns | Zinc finger PHD-type signature. | 531 | 576 | IPR019786 | - | |
| Pumo5g03410 | 958 | CDD | PWWP_AtATX3-like | 180 | 282 | - | - | |
| Pumo5g03410 | 958 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 582 | 697 | IPR034732 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo5g03410 | Pumo-Chr5 | 83193994 | 83202035 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo5g03410 | 531 | 696 | C2H2 Transcription Factor Family | AT3G14740 | 32.571 | 4.51e-21 | 94.0 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Pumo5g03410 | zf-HC5HC2H_2 | 1.5e-29 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo5g03410 | - | - | gmx:100785063 | 1670.6 |