Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03409 ATGACTACGGAGCCAGATGTTGAATCCAAGTACGCCAACAACGGCAAGGTCATGGTGGGCACCGCCATTCTCCTCTTCATTATTATAATTGTCGTTATTTTCTTCCACACCTACGTCCGCTTCTGCCGCCGCCGCCGCCGCCGCCTCTTCTCTCATTCGCTTCCCACCAATAATTCCTCCGCAGACGACCCATGCCTCGACCCTTCCGTTATCAAATCCCTTCCCACTTTTACTTTCTCCGCCGTTACTCACCGCTCCCTCCAGGACTGCGCCGTGTGCCTGTCGGAGTTCGCCGACGGCGACGAGGGCCGCGTGCTCCCCAACTGTAAGCACGCTTTCCACGCCCATTGCATCGACACGTGGTTCGGGTCTCACTCCACGTGTCCTCTCTGCCGAACCCCGGTCCAACCGGCCACGGGTTCAGCTGACACTGAACCGGGTGAGGGTCCGGTTTCCGAACCGGGTGAGGGTTGCTCCTCTTCGTCTTTGCCTCCTCCGATTGGGTGTCCGAGAAAGCCGTTGGGTATAATCGTAGAGATTCCAGAGCTGGAAATTAGAGGGTCGGATCCTGTAACCGGAGATCAAGGGTTCAGATGGTCATTGAAGAGGTTTTGCAACGTTTAA 624 0.5641 MTTEPDVESKYANNGKVMVGTAILLFIIIIVVIFFHTYVRFCRRRRRRLFSHSLPTNNSSADDPCLDPSVIKSLPTFTFSAVTHRSLQDCAVCLSEFADGDEGRVLPNCKHAFHAHCIDTWFGSHSTCPLCRTPVQPATGSADTEPGEGPVSEPGEGCSSSSLPPPIGCPRKPLGIIVEIPELEIRGSDPVTGDQGFRWSLKRFCNV 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03409 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 148 - -
Pumo5g03409 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 140 IPR013083 -
Pumo5g03409 207 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Pumo5g03409 207 MobiDBLite consensus disorder prediction 137 167 - -
Pumo5g03409 207 CDD RING-H2_EL5-like 89 132 - -
Pumo5g03409 207 SMART ring_2 90 131 IPR001841 -
Pumo5g03409 207 Pfam Ring finger domain 89 132 IPR001841 -
Pumo5g03409 207 FunFam RING-H2 finger protein ATL5 67 140 - -
Pumo5g03409 207 SUPERFAMILY RING/U-box 70 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03409 Pumo-Chr5 83186899 83188290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03409 11 144 Rapid Response to Elicitors AT3G16720 44.667 7.13e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03409 - - gmx:100800433 341.273