Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03395 ATGAGCAGACGCTCGAGCAGAACTGTCTACGTTGGAAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCTGAAGTATGGACACATAACACACATTGACCTAAAGGTTCCCCCAAGACCACCTGGTTACGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGATACAATAGTCACAGCAATGGCCGGTCTGGACGTGGGGTATCTAGGCGCTCTGAATATCGTGTTCTAGTCACTGGATTGCCCTCCTCGGCATCCTGGCAGGATCTTAAGGATCACATGCGTAAGGCAGGGGATGTTTGCTTTTCTCAGGTTTTCCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGGATATGTTCGTGTGAGGGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGCAGTCGTAGCCGTAGTTACAGTCGGGACCGGAGTCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAAATCTCCATCAAGATCTCCCTCTCGTTCTCGCTCAAGATCAAGGTCCCGTTCGTTATCAGGATCACGGTCCAGGTCCAGGTCTCCATTGCCTTCGCGTAATAAAAGCCCCAAAAGGCGCAGTGCTAGCAGGAGTCCGAGTAAGAGCAGGAGCAGGAGCAAGAGTTTGTCTCGGTGA 894 0.4855 MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYNSHSNGRSGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSQSKSPKGKSSQRSPAKSPSRSPSRSRSRSRSRSLSGSRSRSRSPLPSRNKSPKRRSASRSPSKSRSRSKSLSR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03395 297 MobiDBLite consensus disorder prediction 230 246 - -
Pumo5g03395 297 CDD RRM1_SF2_plant_like 8 78 - -
Pumo5g03395 297 Gene3D - 2 109 IPR012677 -
Pumo5g03395 297 CDD RRM2_SF2_plant_like 111 186 - -
Pumo5g03395 297 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 263 - -
Pumo5g03395 297 MobiDBLite consensus disorder prediction 271 286 - -
Pumo5g03395 297 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Pumo5g03395 297 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Pumo5g03395 297 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
Pumo5g03395 297 SMART rrm1_1 8 78 IPR000504 GO:0003723
Pumo5g03395 297 SMART rrm1_1 112 185 IPR000504 GO:0003723
Pumo5g03395 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Pumo5g03395 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Pumo5g03395 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Pumo5g03395 297 MobiDBLite consensus disorder prediction 73 108 - -
Pumo5g03395 297 MobiDBLite consensus disorder prediction 186 297 - -
Pumo5g03395 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Pumo5g03395 297 MobiDBLite consensus disorder prediction 73 107 - -
Pumo5g03395 297 MobiDBLite consensus disorder prediction 215 229 - -
Pumo5g03395 297 Gene3D - 110 188 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03395 Pumo-Chr5 83053158 83059178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03395 2 195 Eukaryotic Initiation Factors Gene Family AT4G34110 25.123 2.01e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03395 K12890 - gmx:100796900 360.918