Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03392 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGCCAGCAGAAGAAGCTTCCAGGCGTAGGATTCAAGAAGCTCAAGAAGATCTTGAAGAAGTGCAGGAGAAACTCGCCATCCCAGAAACCCCTTAATGCATCCCTTGCCGCTAAAACCTGCCCCGACCATTGCCCAGTGTGCGATGGGACCTTCTTCCCTTCACTTCTCAACGAAATGTCAGATATAGTGGGGTGCTTTAATCAGCGTGCGCAGAAATTGTTGGAGCTACATCTCGCTTCTGGCTTCAGAAAGTACTGCTTTTGGATCAAAGGCAAATTGCAAGGAAACCATACTGCTCTGATTCAAGAAGGCAAAGATCTTGTTACTTATGCACTCATAAATGCCATTGCAATTCGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTGTTCAAGTCGCAGGTCCAGAGTATGCACAAGGAGATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCAAGGAAGGCACCTGCTTTGTTCGATGGATGTTCTCTCACTTTTAAGGATGGGAAACCGTCACTTACTTGTGAGCTCTTTGATTCTATCAAAGTTGACATTGACTTGACCTGTTCTATATGCTTGGACACACTGTTTGATCCAGTTTCTCTGACTTGCGGTCATATATTCTGCTATATTTGTGCATGCTCGGCTGCATCAGTATCTATTGTTAACGGACTTAAGTCTGCAGATTCTAAAAAGAAATGTCCTCTATGTCGTGAGGGTTCAGTTTATGAAGGTGCTGTGCGCTTGGAAGAACTAAATATTCTGTTAAGCCGAAGGTATGATCCTATTTGTTCCATTATTTTGGGGGGCTTAAAACCAGGGGTGGTAAAAGAAGAGATTGATGTAATTAGAAAACTGTTTTATAACATCTTTTTTCCGCTATATCATTTGATATTAATAATTTCAATCCTTTTACAGCTGTCAGGAATACTGGGAGCAGAGGCTTCAGACAGAGAGGGTGGAGAGGGTTAA 1065 0.4169 MKFCKKYQEYMQGQQKKLPGVGFKKLKKILKKCRRNSPSQKPLNASLAAKTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQKLLELHLASGFRKYCFWIKGKLQGNHTALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAPALFDGCSLTFKDGKPSLTCELFDSIKVDIDLTCSICLDTLFDPVSLTCGHIFCYICACSAASVSIVNGLKSADSKKKCPLCREGSVYEGAVRLEELNILLSRRYDPICSIILGGLKPGVVKEEIDVIRKLFYNIFFPLYHLILIISILLQLSGILGAEASDREGGEG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03392 354 CDD SPX_BAH1-like 2 147 - -
Pumo5g03392 354 SUPERFAMILY RING/U-box 213 272 - -
Pumo5g03392 354 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Pumo5g03392 354 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Pumo5g03392 354 Pfam Zinc finger, C3HC4 type (RING finger) 217 270 - -
Pumo5g03392 354 SMART ring_2 220 268 IPR001841 -
Pumo5g03392 354 CDD RING-HC_BAH1-like 210 283 - -
Pumo5g03392 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 291 IPR033326 -
Pumo5g03392 354 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Pumo5g03392 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 294 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03392 Pumo-Chr5 83026197 83029443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03392 217 269 C3H Transcription Factor Family AT4G28270 39.655 2.24e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03392 K16275 - gmx:100797432 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03392 5 83026197 83029443 Pumo5g03392 5 83026197 83029443 ECH