Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03370 ATGTCAAATATTTCAGGTGATGAAGGAAGTTTCTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAAGCCAGCACCAACAGCTCCAAAACCAACTTCATGACTCAAGTTCAGGACCATCATCCGGTGCTTGCAATAGCAATGCCTCCACTAATCAACAACAAACCAAGAAGAAACGAAACCTTCCTGGAACCCCAGATCCTAATGCTGAAGTTGTTGCTTTATCACCAACCACACTAATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGATTCCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGAACAAGCACTGAGGTGAAGAAAAGGGTCTATGTGTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTAGGGGACCTCACTGGCATCAAAAAGCATTATAGCCGCAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATACGCAGTCCAATCTGACTGGAAGGCCCACCAGAAAACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCTTTCTGTGACGCATTAACTGAAGAAAACAACCGAGTGAACCAGGGATTAACAAGTGGCATGCCACCAAACTTGCAAAGTCAGATACCGGATCTCATGTCCACCATGCCCCTAACCACTAGTCCCAACACAGCATCCAAATTCGGGGACTATGACCCTAAGAATCCACTAAAATCACTCGCCCAAGAACTTGTCCCAATACCATTCAAGTCCATGAGCATGGGTGGGGGCATGTTCTCCACCAATGCAGGTGCACTTTTTGGTGGCCCAAAAACCATGTCTCCCTCTTCTTCCAGCCTCCAGCTAGGCTCCAGCACCTCATCAAGCTTCAATTACTTGCAAGACAGCAAAAATGGAGGACTAATTGCTGCCTCAGCTCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAATAGCATTAACTCCCCCATGATGCAAAAAGGCTTTGTTAGTGGCACTGCTGGTCCTGATCATGTTTCTTCCACTACTAGGCCACCATATTCTGCTGCTATGCTTCAGCATAACAACTCCTTTGACCACTTCTCTCCACAGCCTGATCTGTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCATTCATCAATCAGTTGTTTCACAAAGGACAAGAAATTTCACAAGTTTTTGACACTAACACTGGTGGGTCTGCAATGAATAATGTGGGAATGTTCAGCCAAATGCCAATGGGGAGTGACCACAACCCGGGGTTGATGAAGAATGTGGAACAAGAGGTTAGTAATAGTTCGAGTTTGATCCATGGAAGAGATGTGGCTGAAGGTAACCACCCAATGCAACCATCAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTCTTGGGGATTGGTGGTTCAACTTCTAGAGTTATGAATCATTTTCATCACCATTTTCCACACGATGATTCAGCTATGGAGGAACCCATGTGGGATGTTTGA 1599 0.459 MSNISGDEGSFSSGNNGEEVHQESQHQQLQNQLHDSSSGPSSGACNSNASTNQQQTKKKRNLPGTPDPNAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLMSTMPLTTSPNTASKFGDYDPKNPLKSLAQELVPIPFKSMSMGGGMFSTNAGALFGGPKTMSPSSSSLQLGSSTSSSFNYLQDSKNGGLIAASAQMSATALLQKAAQMGATASNSINSPMMQKGFVSGTAGPDHVSSTTRPPYSAAMLQHNNSFDHFSPQPDLSNMAGVSGGGAFINQLFHKGQEISQVFDTNTGGSAMNNVGMFSQMPMGSDHNPGLMKNVEQEVSNSSSLIHGRDVAEGNHPMQPSRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHDDSAMEEPMWDV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03370 532 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 509 IPR031140 -
Pumo5g03370 532 SMART c2h2final6 86 108 IPR013087 -
Pumo5g03370 532 SMART c2h2final6 127 157 IPR013087 -
Pumo5g03370 532 SMART c2h2final6 162 182 IPR013087 -
Pumo5g03370 532 Gene3D Classic Zinc Finger 64 132 - -
Pumo5g03370 532 SUPERFAMILY beta-beta-alpha zinc fingers 85 183 IPR036236 -
Pumo5g03370 532 FunFam protein indeterminate-domain 12-like 65 133 - -
Pumo5g03370 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Pumo5g03370 532 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Pumo5g03370 532 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Pumo5g03370 532 MobiDBLite consensus disorder prediction 1 71 - -
Pumo5g03370 532 Gene3D Classic Zinc Finger 140 220 - -
Pumo5g03370 532 Pfam Zinc finger, C2H2 type 86 108 IPR013087 -
Pumo5g03370 532 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03370 Pumo-Chr5 82803358 82806078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03370 35 369 IDZ Gene Family AT3G50700 53.005 6.61e-114 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g03370 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03370 - - gmx:100782774 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03370 5 82803358 82806078 Pumo5g03370 5 82803358 82806078 ECH