Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03369 ATGGATGCGTGGAACGAAGATTTTTCGGAGCTGGAGATTGGGAGCTCCGCGGAATCGTTCCAGAAGTTTTTGGTTTCGCAGAGAGAGCTCTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAAACTCACCGGCGTCAATCCTCTCTCTCAGGAAATGGCAGCTGGTGCTTTGTCAATAAAAATTGGAAAAAGACCTAGGGATTTACTGAATCCAAAGGCTGTAAATTACATGCAATCAGTTTTTTCCATTAAAGATGCTATTAGCAAGAAAGAATTGCGCGAGATCAGTGCTCTATTTGGTGTCACAGTGACACAGGTGCGTGACTTTTTCAATGCTCAACGTTCAAGAGTGAGGAGACTAGTGCAGTTGTCAAGGGAGAGGGCATTGAGTTCTAATTCTTGTGACGAACCTCATGATGATCAAATAAACTCTGATCCTATGAGACCAATAAATATCACTCCCTTAAACTCTGCTGGCCCGTCCAATACCGAAGAAGCATCTTGTTCAACACAGGAAGTGGCTTTGTCTGACCTAGATGACTCAGATAAACAATTTGTTGATAACATTTTTAGTTTAATGCAAAAAGAGGAGACATTTTCTGGGCAGGAGAAATTGATGGAGTGGATATTGACGATACAGAATTTTTCAGTATTGTTGTGGTTTTTAAGCAGAGGGGGTGGAATGACTTTAGCAACTTGGTTGAGTAAGGCAGCTGTTGAAGAGCAAACAAGTGTCCTTCTTCTTATCTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCTGTTCCCATGCACATATCAGCTATATTACAGAGTGTAAATAAACTACGGTTCTACAGGACATCAGACATATCAAACAGGGCAAGGGTTTTATTGTCAAAGTGGAGCAAATTATTAGCAAGGAACCAAGTAATAAAGAAGCCCAACGGTGTTAAGACTTCTAGTGATGCTCATAAAGAGATGATGCTTTCTCAGAGTATTGGTCAATTTATGGGCTCTGAATCATGGCATGCAAATATTGATGTTCCTGAAGACATTCTCGCTCTCTCAAGCGAATGTTCGGATAATTTCAGGAAAATGGGATCTCCACAAGGTGTGAAATTGTTGCCTTCCAGCTTGGATGATTCTAATAAAAAGTCCACTCTTGGTTTATCTTCATCTCAATCTAGAGAACGCAGAAAAGTGCAATTGGTGGAACAGCCAGGCCAAAAGTCAGTGAGCAGAAGCTCACAAGTGACAAGAGCAGGGCCTGTAAGTCAAGGCCGTCCCATGTCTGCTGATGATATTCAGAAAGCAAAAATGCGTGCTTTATTTATGCAGAGTAAGTATGGGAAATCTGGTTCAAAAGAAAGTAAAGAAACAAAGATTGATAGTCTGAATAAACAACCTCAGACAAACCCCGCCAGTATTGCAGCTTGCTCTTCTAAAGTTCCTACTCCACCCAAAATAGAAGAAAACAAGAAACCTCTGTTACTTGCCTCTAAAACCACTAATTGGCTGGAAGCTTCTTATTCAAAACCAAAAATGGATGTGAAGGAACCTCTCTGGGAAAAGTGCAAGAGGGTTCAGATCCCATGGAAAACACCAGCAGAAGTGGAACTTAAAGATACCTGGAGAGTTGGTGGCGGTGAAAATAGCAAAGAGGTTGATGTCCAGAGAAACAGAAACCGCAGGGAAAAGGAAACTATATACAAGACTGTCCAAGAGATGCCACCTAACCCCAAGGAGCCTTGGGACGTTGAAATTGACTATGATGACACTTTGACGTTAGAAATTCCTATTGAACAGCTACCAGATGGTGATGGTGCAGATATAGCAGTTTCCCCCAATCCGGTTGCAACTCATACTGTTCAAGGGGTGGCCTCCACATCTTCAACCAGTGTGGCCACTGCTGAGCCTGATTTAGAATTGCTTGCTGTACTGCTAAAAAATCCAGAGTTGGTATTTGCCTTAACTTCTGGACAAGGTGGTAGCATACCGAGTGAAGAAACCGTGAAGCTGCTTGACATGATCAAGAGAGGAGGTGTGAACTTGGGTTTAAGTGAAAATACAAATGGAAGTTATGGCACGAGTGTAAAGGCCCAGGAGAAGGTGGAAGTTTCTCTCCCATCTCCAACCCCTTTAAGCGATCCAAGAACGAGTGGATGGAGCTCAGAAGCATCCAAAAACCCCTTTTCACGGCGAAGTGTAGCACCCGATAGAATTACACAGAACCATGCTGCAGTGGCAACTACCAACTTATTATCTCAGATTCCCATAACTGGCACTACAGTAAGGCAACGGCCAACAGTTGTGGTTCCATCTTCGAGGCATCTCACAAGCGCATCAGTTTCTCAATATTCAGTGCCTCATGCAACTAATGTTATTCCTGAAAAGCCACCACCACTGGGGCATGTACAAACACCATCCTCAGATGTAGGTTTAACCATGAAGAAGAACTTAATCAGTGCAAATGCATCTTCAGTTAACTTTACTGGCACACATTCAGCTCTAGCAATGCGGGGTGATGGCACCAATTATGTAAAACCTGTACCTAATTTGAGTGTACAACATGAGGGTTTGTCTAATTCATTCCCACAACCCTTCATGCCACCCTCACCAACGCCATCACATTCAGCCTCACAGCAACAAAGACATCAACATGTGATCCAGGAAGCCCATTACACTGAACCTTCCTATCGTAACCCTGTTCGTTCCTACCCACCACAAATCGAAAAATCAGATCATGGGTCTGACAATATGTGGAGAGTTAGGCAGGATCATGTGTCATCCAGTTATCATTCTCAACGAAATCATAACAACTATAACACAATGGTTGGGGGATCCAGGCAATCTGGTTTTTGGGATAGAAATAATCATGGAAGGGAACAATTTGAATCATGGAGTCCGGAGAATAGTCCAACTAGAAATCCTAGGTATGCACCAGGTAGAAATTACCCAGAGTCCAGAATGAATCAAAATCATGGTAGAAATCATAGACCCGAATGGTCAAGGCAGAGGGGTTCTTCTGGACACTGGGACCCTGGCAGGCAGGGAAATAGAAAGTGGCATGATCAGAGACGATGA 3084 0.4309 MDAWNEDFSELEIGSSAESFQKFLVSQRELFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSVFSIKDAISKKELREISALFGVTVTQVRDFFNAQRSRVRRLVQLSRERALSSNSCDEPHDDQINSDPMRPINITPLNSAGPSNTEEASCSTQEVALSDLDDSDKQFVDNIFSLMQKEETFSGQEKLMEWILTIQNFSVLLWFLSRGGGMTLATWLSKAAVEEQTSVLLLILKVLCHLPLHKAVPMHISAILQSVNKLRFYRTSDISNRARVLLSKWSKLLARNQVIKKPNGVKTSSDAHKEMMLSQSIGQFMGSESWHANIDVPEDILALSSECSDNFRKMGSPQGVKLLPSSLDDSNKKSTLGLSSSQSRERRKVQLVEQPGQKSVSRSSQVTRAGPVSQGRPMSADDIQKAKMRALFMQSKYGKSGSKESKETKIDSLNKQPQTNPASIAACSSKVPTPPKIEENKKPLLLASKTTNWLEASYSKPKMDVKEPLWEKCKRVQIPWKTPAEVELKDTWRVGGGENSKEVDVQRNRNRREKETIYKTVQEMPPNPKEPWDVEIDYDDTLTLEIPIEQLPDGDGADIAVSPNPVATHTVQGVASTSSTSVATAEPDLELLAVLLKNPELVFALTSGQGGSIPSEETVKLLDMIKRGGVNLGLSENTNGSYGTSVKAQEKVEVSLPSPTPLSDPRTSGWSSEASKNPFSRRSVAPDRITQNHAAVATTNLLSQIPITGTTVRQRPTVVVPSSRHLTSASVSQYSVPHATNVIPEKPPPLGHVQTPSSDVGLTMKKNLISANASSVNFTGTHSALAMRGDGTNYVKPVPNLSVQHEGLSNSFPQPFMPPSPTPSHSASQQQRHQHVIQEAHYTEPSYRNPVRSYPPQIEKSDHGSDNMWRVRQDHVSSSYHSQRNHNNYNTMVGGSRQSGFWDRNNHGREQFESWSPENSPTRNPRYAPGRNYPESRMNQNHGRNHRPEWSRQRGSSGHWDPGRQGNRKWHDQRR 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 406 424 - -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 152 172 - -
Pumo5g03369 1027 Gene3D - 66 127 - -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 687 734 - -
Pumo5g03369 1027 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 106 1012 - -
Pumo5g03369 1027 SMART HOX_1 68 130 IPR001356 GO:0003677
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 448 488 - -
Pumo5g03369 1027 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 230 309 IPR035441 -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 712 734 - -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 964 978 - -
Pumo5g03369 1027 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Pumo5g03369 1027 SUPERFAMILY Homeodomain-like 68 131 IPR009057 -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 992 1006 - -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 137 172 - -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 375 397 - -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 464 479 - -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 857 1027 - -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 374 432 - -
Pumo5g03369 1027 MobiDBLite consensus disorder prediction 923 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03369 Pumo-Chr5 82789814 82798794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03369 465 790 Homeobox Transcription Factor Family AT4G02560 39.759 6.27e-48 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03369 - - gmx:100780237 1849.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03369 5 82789814 82798794 Pumo5g03369 5 82789814 82798794 ECH