Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03363 ATGGTGTCGCTGAAACTGCAGAAGCGGCTGGCCGCAAGCGTACTCAAGTGCGGCAGAGGAAAGGTTTGGCTTGACCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGCAGTTTGGAGTTGATGAATGGTCCTGTTGACAAGCCATCTACAGCACCCAGTGCCCCAGCTGCCGCAGCACCCCAGTCTGCCCAAGCGCCAAAGAAATCCAAGAAGTGA 222 0.5405 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRSLELMNGPVDKPSTAPSAPAAAAPQSAQAPKKSKK 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03363 73 FunFam Ribosomal protein L19 1 45 - -
Pumo5g03363 73 SMART Ribosomal_L19e_2 3 73 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pumo5g03363 73 Pfam Ribosomal protein L19e 4 39 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pumo5g03363 73 MobiDBLite consensus disorder prediction 42 73 - -
Pumo5g03363 73 PANTHER 60S RIBOSOMAL PROTEIN L19 1 39 IPR039547 GO:0003723|GO:0003735|GO:0022625
Pumo5g03363 73 Gene3D - 2 67 IPR015972 GO:0003735|GO:0005840|GO:0006412
Pumo5g03363 73 SUPERFAMILY Ribosomal protein L19 (L19e) 3 39 IPR035970 GO:0003735|GO:0005840|GO:0006412
Pumo5g03363 73 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03363 Pumo-Chr5 82736590 82738468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03363 1 38 Cytoplasmic Ribosomal Protein Gene Family AT1G02780 86.842 7.40e-19 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03363 K02885 - vvi:100246855 78.1814