Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03350 ATGGAGGAACACTCTTCTTCTGCATCTGCATCTGCAACTGAGAAGAGAGAGGATTTTGGGAAGTTGCAGTACGGATGCGAGCACTATAAGAGACGATGCAAAATTCGATCTCCATGCTGCAATCAGATCTTTCCATGTCGTCACTGCCACAACGACGCCGTGAACTCATCTAGCAACCCTAAGGATCATCATGAACTTGTTAGACGCGATGTTAATCAAGTTATATGCTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAACTGTGGCGTCAACATGGGAGAATATTATTGCGAGATTTGTAAATTCTATGATGATGATACTGATAAAGGACAATTCCATTGCGATGAATGTGGCATTTGCAGGGTTGGTGGTCGTGATAACTTCTTTCACTGTAAGAAATGTGGCGCTTGCTATTCAGTGAGCATGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAATTTCTGCCCTGTCTGTTTGGAGTACCAATTTGATTCAATAAGAGGCAGCACCGTTTTGAAGTGTGGACACACAATGCATATGGAATGCTATCGAGAGATGACAACTCAAAATCAGTATCGCTGTCCTATATGCTTGAAGACAATAGTCAATGATATGTCTGAGAAATGGGAAAATTTAGATCGGGAGATTGAAGGCGTTGATATGCCTGAGGAGTACAAGTTTGAGGTTTCAATTCTATGCAATGATTGTAACTCTACCAGCACAGTATTTTTTCACATATTTGGTCACAAGTGTAGCCAGTGCAGTTCGTATAACACCCGTAGGATTTCAAAACCCCAACAGGAGTAA 825 0.417 MEEHSSSASASATEKREDFGKLQYGCEHYKRRCKIRSPCCNQIFPCRHCHNDAVNSSSNPKDHHELVRRDVNQVICSVCDTEQEVAKVCSNCGVNMGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRDNFFHCKKCGACYSVSMQNNHSCVENSMKNFCPVCLEYQFDSIRGSTVLKCGHTMHMECYREMTTQNQYRCPICLKTIVNDMSEKWENLDREIEGVDMPEEYKFEVSILCNDCNSTSTVFFHIFGHKCSQCSSYNTRRISKPQQE 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03350 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 215 IPR013083 -
Pumo5g03350 274 SUPERFAMILY Zinc hairpin stack 97 154 IPR037275 -
Pumo5g03350 274 ProSiteProfiles Zinc finger CHY-type profile. 19 94 IPR008913 GO:0008270
Pumo5g03350 274 Pfam CHY zinc finger 26 106 IPR008913 GO:0008270
Pumo5g03350 274 CDD RING-H2_Pirh2-like 161 203 - -
Pumo5g03350 274 ProSiteProfiles Zinc finger CTCHY-type profile. 96 160 IPR017921 -
Pumo5g03350 274 Gene3D - 233 273 - -
Pumo5g03350 274 Pfam Zinc-ribbon 210 266 IPR039512 -
Pumo5g03350 274 SMART ring_2 161 203 IPR001841 -
Pumo5g03350 274 SUPERFAMILY CHY zinc finger-like 22 95 IPR037274 GO:0008270
Pumo5g03350 274 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Pumo5g03350 274 SUPERFAMILY RING/U-box 160 207 - -
Pumo5g03350 274 Pfam Ring finger domain 161 203 IPR001841 -
Pumo5g03350 274 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 8 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03350 Pumo-Chr5 82638431 82641699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03350 24 268 C2H2 Transcription Factor Family AT3G18290 41.270 3.80e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03350 K10144 - gmx:100818374 535.798