Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03349 ATGAGTGGTGAGGCGCGACCCTGTGACTACTGTGGCCACTCCACAGCACTTCTCTACTGCAGAGCCGATTCAGCCAAGCTCTGTTTCTCTTGTGATCGCGAGGTTCACTCCACCAACCAGCTCTTCTCCAAGCACACGCGTACGCTGCTCTGCGACGCATGCGATGATTCCCCTGCCACCATACTCTGTTCCACCGAAGCCTCTGTTCTGTGCCAGAACTGTGACTGGGAGAAGCACAACCCTGCGCTCTCTGATTCCCTTCACGAACGGAGGCCCCTCGAAGGCTTCACTGGGTGCCCTTCAGTCTCCGAACTCTTATCTATCGTGGGCTTTGGAGATGTCAGCAAAAAAACTCTGCTTTCTTCGCCTCAGGGAAGTGGCGCTCATGGGTTCCTTGGGTGCGAAATTGAAGGGCTTTCGGATTTGTTCGTGTGGGATGCGCCTTCTGTTGTTACGCTTGATGATTTGATTTCTTCCTCTGCTTCTTCTCACAGCTTTCAGGCCATGGAAGTTCCTCCTCTGCCCAAGAATCGTAAGGCTGCTTGTGGGCAACACAAAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAAGTCTGAGCCATTGGACCTTGAACCATATGTGCAATTGGGGAACTTGTCCTCGGGTTTTGAACATGACCTGGAGGCTGATATCTTTCCTTCTCATGAGTGGCATAGAGAAAGCAGTGAGCCTATGTATCAAGTTGTTCCTCCTGACCCTTCATCGAGAACTTATACTGAAGAAATTCCTGTTAAACATTCTACTCCTGCTGTTGGGGAAACTCACACCTATGGTGACGATGGAGGGAAACCATCCGTTTCTCTCAAGCCTGAAACACTATCAACTACTCCCAAAGCTGTGGCATGTGAGTTAATGAGCCAAGAAAGAGATTCTGCATTATTACGATACAAGCAGAAGAAGAAAACAAGAAGATTTGACAAGCACATAAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGGTAAGAGTCAAGGGCCGATTTGCCAAGATGGAACAGGAACACTGA 1050 0.4924 MSGEARPCDYCGHSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTEASVLCQNCDWEKHNPALSDSLHERRPLEGFTGCPSVSELLSIVGFGDVSKKTLLSSPQGSGAHGFLGCEIEGLSDLFVWDAPSVVTLDDLISSSASSHSFQAMEVPPLPKNRKAACGQHKEEILSQLRELAKSEPLDLEPYVQLGNLSSGFEHDLEADIFPSHEWHRESSEPMYQVVPPDPSSRTYTEEIPVKHSTPAVGETHTYGDDGGKPSVSLKPETLSTTPKAVACELMSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKMEQEH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03349 349 ProSiteProfiles Zinc finger B-box type profile. 3 50 IPR000315 GO:0008270
Pumo5g03349 349 CDD Bbox1_BBX-like 7 50 - -
Pumo5g03349 349 ProSiteProfiles CCT domain profile. 303 345 IPR010402 GO:0005515
Pumo5g03349 349 MobiDBLite consensus disorder prediction 263 284 - -
Pumo5g03349 349 Pfam CCT motif 303 345 IPR010402 GO:0005515
Pumo5g03349 349 Pfam B-box zinc finger 50 93 IPR000315 GO:0008270
Pumo5g03349 349 Pfam B-box zinc finger 5 48 IPR000315 GO:0008270
Pumo5g03349 349 ProSiteProfiles Zinc finger B-box type profile. 46 93 IPR000315 GO:0008270
Pumo5g03349 349 SMART bboxneu5 51 93 IPR000315 GO:0008270
Pumo5g03349 349 SMART bboxneu5 3 50 IPR000315 GO:0008270
Pumo5g03349 349 CDD Bbox1_BBX-like 50 93 - -
Pumo5g03349 349 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03349 Pumo-Chr5 82629019 82633486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03349 6 318 C2C2-CO-like Transcription Factor Family AT2G47890 41.463 2.42e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo5g03349 zf-B_box 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03349 - - gmx:100817838 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03349 5 82629019 82633486 Pumo5g03349 5 82629019 82633486 ECH
Pumo5g03349 5 82629019 82633486 Pumo3g02272 3 34801858 34805325 PCT