Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03338 ATGAGGAGGAGGAGAGAGATGGACGCTCCAGACAGAGAAGGGCTTCGCCCTAACCAAGGTGTGCAAGATAATTTGTATACTGAACTGTGGCGTACGTGTGCTGGGTCGTTCGTTTATGTTCCTCGCGTTGGAGAGAAGGTTTTCTATTTCCCTCAAGGCCACTTGGAGCAGGTTGCTGCATTTACTCAGCATCAGCAAGATGGTCACATGGAAATTCCTGTGTATGATTTGCCTTCTAAGATCTTATGCAGGATTGTGTGTGTTCAATTAAAGGCCGAAACTTACACAGACGAGGTTTTTGCCCAAGTTACATTAGTTCCGGAGCCCAAGCAAGATGCCCTTAATTTAGAGGACGAAGACAATTATCAGATACCTTCCAGAAATACAACCTACGCTTTTAGTAAGATACTCACTCCGTCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGAAACATGCTGATGAATGCTTCCGTCCTCTGGACATGACTCATCAAACACCAGCGCAGGAAATTGTTGCAAAGGACATGCATGGGTTTGAGTGGCATTTTCGACACATTTATCGTGGTCAGCCGAAACGACACTTGCTTACTAGCGGTTGGAGCACATTCGTTAATGCAAAGAAACTTGTTGCTGGAGATTCTTGCATTTTCGTTAGTGGGGAATCTGGAGAAATTCGTGTTGGGATTCGTCGGGCAGCGAACCATCTCAGCAATGCAACCCCAGTCTTCATCTCTGATATCGGGATGAATCCCTTTGAATTTATTATTCCTCTGCAAAACTATTTGAAGTCAACTCTACTCAACTATCCAATTGGGACGAGAGTACAAATGCAATATGAAGTTGAAGAGTCTTTAAAAAGATATGCAGGTACGATAGTTGGTAATGAAGTTATCGATAAGATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATGCCATACTAGATGTCCACATGCATCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGACAATGCCAAGGAGAAGCACGTTCCTGTTCTGCCCACCACAAGAAAGACACATGTGCTTAACCAGCGCCCTTTGCCTGGATTAAGTGGCTTTGCCATGGATGGTGTTCAGAATTTAGCCGGGCCTTCATCTCAGACTCGGAGAGCGGATAGAGGACATTGCAAGGTCAAGATTACAGCGGCCTATGTTCTCCTCCGCCTTTGCAAAGAGCACCATCAACTGATGTAA 1242 0.4541 MRRRREMDAPDREGLRPNQGVQDNLYTELWRTCAGSFVYVPRVGEKVFYFPQGHLEQVAAFTQHQQDGHMEIPVYDLPSKILCRIVCVQLKAETYTDEVFAQVTLVPEPKQDALNLEDEDNYQIPSRNTTYAFSKILTPSDTSTHGGFSIPKKHADECFRPLDMTHQTPAQEIVAKDMHGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFVSGESGEIRVGIRRAANHLSNATPVFISDIGMNPFEFIIPLQNYLKSTLLNYPIGTRVQMQYEVEESLKRYAGTIVGNEVIDKIRWPGSEWRCLKVQWDAILDVHMHPERVCPWWIEPLDNAKEKHVPVLPTTRKTHVLNQRPLPGLSGFAMDGVQNLAGPSSQTRRADRGHCKVKITAAYVLLRLCKEHHQLM 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03338 413 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Pumo5g03338 413 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 351 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo5g03338 413 Pfam Auxin response factor 252 314 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo5g03338 413 Gene3D - 271 343 - -
Pumo5g03338 413 CDD B3_DNA 133 233 IPR003340 GO:0003677
Pumo5g03338 413 Gene3D - 131 235 IPR015300 -
Pumo5g03338 413 FunFam Auxin response factor 131 235 - -
Pumo5g03338 413 FunFam Auxin response factor 270 342 - -
Pumo5g03338 413 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Pumo5g03338 413 SMART B3_2 133 235 IPR003340 GO:0003677
Pumo5g03338 413 SUPERFAMILY DNA-binding pseudobarrel domain 122 239 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03338 Pumo-Chr5 82495384 82503123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03338 25 337 B3 DNA Binding Superfamily AT5G62000 50.882 5.66e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo5g03338 B3 3.2e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03338 - - gmx:100802387 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03338 5 82495384 82503123 Pumo5g03338 5 82495384 82503123 ECH