Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03333 ATGGCGGAAGGTAAGGAAGAGAGTAAATCTAGCGAGGAAAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAGCCCGAACTGCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAGGTCAACGTAATCAAAGACAAAGCAACTCGTGCTTCCCGAGGTTGTTGCTTCTTGATTTGTCCCTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAAGAAGACGCTACCCGGGGCATCTAGTCCTTTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCACTTTTCTCCAATTATGGTACTATAAAGGATTTGCAGATTTTAAGAGGTTCCCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCCGTCATTGTTTGGAGCCGTGCCTATGAGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGAGGTTATGGGCTAATGCCATACCGCATGCCACCAATGCAGAGTCAACATGGTTACCATAATATGATGCCTCACATGAATCAAGGAAATGCATTACGGCCTGATCTTGGCCCCAATATGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTACGTTGGCTCTTATCCTACTGTGCCAGGTCTACAACATCCTATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATACTTCTCCTGGCTCTGTTTCACCTGCTGGTGGAAATAACAACTCTGCTGCATCTTCAGGCGGCGGCAAAAATTCTGGGGGTCAGGTTGAAGGACCACCTGGTGCCAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAGGCTGCTCAATCTGCCATCGGTATGATGAATGGATGCCAATTAGAAGGTAAGAAATTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1296 0.4444 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNVIKDKATRASRGCCFLICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHPSLFGAVPMSYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPTVPGLQHPMAYPTGMISPRPMNTSPGSVSPAGGNNNSAASSGGGKNSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIGMMNGCQLEGKKLKVQLKRDNKQGKPY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03333 431 CDD RRM1_2_CELF1-6_like 104 179 - -
Pumo5g03333 431 PANTHER RNA BINDING PROTEIN 14 424 - -
Pumo5g03333 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Pumo5g03333 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Pumo5g03333 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Pumo5g03333 431 Gene3D - 101 192 IPR012677 -
Pumo5g03333 431 MobiDBLite consensus disorder prediction 306 336 - -
Pumo5g03333 431 FunFam RNA-binding protein BRN1 2 99 - -
Pumo5g03333 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Pumo5g03333 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Pumo5g03333 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Pumo5g03333 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Pumo5g03333 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Pumo5g03333 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Pumo5g03333 431 MobiDBLite consensus disorder prediction 303 343 - -
Pumo5g03333 431 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Pumo5g03333 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Pumo5g03333 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Pumo5g03333 431 SMART rrm1_1 347 420 IPR000504 GO:0003723
Pumo5g03333 431 MobiDBLite consensus disorder prediction 185 209 - -
Pumo5g03333 431 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Pumo5g03333 431 Gene3D - 2 100 IPR012677 -
Pumo5g03333 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Pumo5g03333 431 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
Pumo5g03333 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Pumo5g03333 431 CDD RRM3_CELF1-6 348 420 - -
Pumo5g03333 431 FunFam RNA-binding protein BRN1 313 423 - -
Pumo5g03333 431 Gene3D - 315 423 IPR012677 -
Pumo5g03333 431 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03333 Pumo-Chr5 82465159 82469882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03333 345 421 Eukaryotic Initiation Factors Gene Family AT2G23350 35.065 2.96e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03333 K13207 - gmx:100813239 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03333 5 82465159 82469882 Pumo5g03333 5 82465159 82469882 ECH
Pumo5g03333 5 82465159 82469882 Pumo3g02284 3 34912327 34916385 PCT