Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03314 ATGTCGATATTATCAAGCATGGACATGCCTACCATTGATGTGGACCTTGGGCCTGAGAAGCTTGAAGATGAGAAACAGGGAGGCCCCTTGTTGCATTGTGATCTTTGTGATACAGAAGTAGTTCACAAGTTGGCTCAAATGTTCCTTCCAGGTATAGCTAGTGCTTGTGTTGATAACACATCGGGAGATCTCTTCAAGACTCCTGGTTCAGTGGCTGTTGATTTGAGAAAGGAAATGATAGAGTATCTTACCCAGAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTGGAAGGTGGTCCGGATGGTGAAGTATCGGACCATCCTTTTGATATCATTTCTAATTTCGTTGATGACTTTGTGAGTTCAAAGAGGAATTTGTTTAGCCGGGTTTCGGGATGGCTGCTGAGTGAAAAGAGGGAAGACAAAATAGATGATTTTGTTCAAGAGATGGAAATGAATGGGTTTTGGACACTTGACAGGAGAGAAACAATAGCAGAAACTTTACTCAAGAATGTTGACTTTGAGAACTCATATCATTGCAGCATGAGTTTTAATTCTGCGGAAGAACTTGCCAATCATGTTGATAACTGCAACTTTAGATCTATGATCTGCGAAAATGAGGGATGCAACTCCAGATTTTGCACAGCTCATTTGAAGAAGCATGATTCAACTTGTCCTTTCAAGATAATTCCATGTGAACAGAAGTGCTCTGATAGCATTATGAGACGTGAGATGGACAGGCATTGTATAACTGTTTGTCCAATGAAGCTTGTAAATTGTCCTTTTTATTCCGTGGGTTGTAGGTCAGCTGTTGCACAAAGTATGATTGAAAAGCACCGTTTAGATGACATTGATTCTCACTTGTGGCACTTGCTTAAAGGCATCTACAAGCAAGCATATGGGGATGATCTTAAACGACGAGTGGAGCAAATTGTACAGGCATCATCAAGCAGCCGTTTAGCAGAGGCTCGGGATGTTAGATCTTTAAACTTGATTGTCAAAGATATTGAAGCTAAGCTAGGACCTTTCAAAGGGAGAACCGTGGAGAAAAATAGTGCAGGGACTGTTGCCAAGAATGGTGAAGGGGAAGGTGGTGAGACTGATATGAACAGCAGTGAAAAGAGCATAAAGGCTTCAGATATGGTCAATTCATCAGATAAAGCTGAAGTGAGTGACAATGTGAATATGAATAATGCAGAGAATACTGCCAAGAAAGAAGATAGTGAACCTAGTCCTGTTGAAAACAAAGGCTGTGAAGAGAGGACACAAACTTCAAATACGGCAAATTTATCTGATAAAACTGAAGTTGGCCTCCCGAATGATGAGAACAAAGATGCTGCAGCTAGTGAATTAAAAATCAAGGGCAACGATGAGAGCACTCAAACACATGTGGAAAAATTATCAAATGAGGAAGTTAGTGCCACAAATGAGGGCAGTGCAGAGAATAGCATCAAAAGCAAATATGATGAAGACAGTAAATTCGAAGATAAGGACAACGAACAAAGCATACAGAATTCAAAAATGGAAACCAAGGGTGGTGCAGAGAATAATATCAAGAACAAAGATGTTGAAGATGGTGACTTAAAAAAGAGCATACAAACTCCAGAACTGTAA 1617 0.402 MSILSSMDMPTIDVDLGPEKLEDEKQGGPLLHCDLCDTEVVHKLAQMFLPGIASACVDNTSGDLFKTPGSVAVDLRKEMIEYLTQRSESFVAESVILEGGPDGEVSDHPFDIISNFVDDFVSSKRNLFSRVSGWLLSEKREDKIDDFVQEMEMNGFWTLDRRETIAETLLKNVDFENSYHCSMSFNSAEELANHVDNCNFRSMICENEGCNSRFCTAHLKKHDSTCPFKIIPCEQKCSDSIMRREMDRHCITVCPMKLVNCPFYSVGCRSAVAQSMIEKHRLDDIDSHLWHLLKGIYKQAYGDDLKRRVEQIVQASSSSRLAEARDVRSLNLIVKDIEAKLGPFKGRTVEKNSAGTVAKNGEGEGGETDMNSSEKSIKASDMVNSSDKAEVSDNVNMNNAENTAKKEDSEPSPVENKGCEERTQTSNTANLSDKTEVGLPNDENKDAAASELKIKGNDESTQTHVEKLSNEEVSATNEGSAENSIKSKYDEDSKFEDKDNEQSIQNSKMETKGGAENNIKNKDVEDGDLKKSIQTPEL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03314 538 MobiDBLite consensus disorder prediction 467 483 - -
Pumo5g03314 538 MobiDBLite consensus disorder prediction 403 417 - -
Pumo5g03314 538 MobiDBLite consensus disorder prediction 515 538 - -
Pumo5g03314 538 MobiDBLite consensus disorder prediction 438 466 - -
Pumo5g03314 538 MobiDBLite consensus disorder prediction 484 505 - -
Pumo5g03314 538 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 30 479 - -
Pumo5g03314 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 284 IPR013083 -
Pumo5g03314 538 MobiDBLite consensus disorder prediction 352 538 - -
Pumo5g03314 538 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Pumo5g03314 538 ProSiteProfiles Zinc finger TRAF-type profile. 222 278 IPR001293 GO:0008270
Pumo5g03314 538 MobiDBLite consensus disorder prediction 366 402 - -
Pumo5g03314 538 SUPERFAMILY TRAF domain-like 237 293 - -
Pumo5g03314 538 MobiDBLite consensus disorder prediction 418 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03314 Pumo-Chr5 82306949 82311713 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03314 - - gmx:100799182 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03314 5 82306949 82311713 Pumo5g03314 5 82306949 82311713 ECH
Pumo5g03314 5 82306949 82311713 Pumo3g02938 3 52389469 52392867 PCT