Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03313 ATGGCTTCAAAATTTTGGGATCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGAAACCGCGGTAGGTGAATCTGCTAGTCAAGCAGTGACAAGCAGATACTTGCAGGACAATGCAAGCGACAGTGATGATTCTGATGGCCAAAAGCGCGTTGTGAGGTCGGCGAAAGATAAGCGGTTCGAGGAGATGGCATCCACTGTTGACCAGATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAGCAGCTTGAGAAAGTTATGCGTGTCACTGAGTCTGATAAGGTTCCAAATCTGTACATCAAGGCGCTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAGGCCTTGAACTCCATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGAGTTGATTAATAAGTGCAGGGAGAATCCCGAGAGTGAGGAGGAAAAGGAGGAGGAGGAGAGTGAGGAAGAGTATGAGAGTGATGATGAGATTATTGAGCCAGAGCAGCTTCGGAAACCGGAAGCAAAATCTGATTCGGAAGCCTCTCAGTATGATGATGAAAGGCAGGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACCGGCTTTTGGATAGGCAGTTCATGAAAGACCCTAGTGAGATCACGTGGGACACAGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCCAGGGGTAGGAAGGGTACCGGCAGATTTGAACAGGTTGAGCAGCTTACTTTCTTAACGAAGGTTGCTAAGACACCTGCGCAGAAGCTGGAAATTTTGTTCAGTGTGGTTTCTGCACAGTTCGATGTTAATCCAGGGCTCAATGGGCATATGCCTATAAATGTATGGAAAAAATGTGTGCAAAACATGCTGATCATTCTTGATATTCTAGTACAGTATACAAACATAGTGGTTGATGATTCGGTGGAACCAGATGAGAATGAAACTCAGAAAGGGATTGACTATAATGGACCAATTCGGGTTTGGGGTAACTTGGTTGCTTTCTTAGAAAGAATTGATGTTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACCCGGGACTATGTTGAGAGACTCAAGGATGAGCCCTTGTTTCTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCTGCATCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGAGGTTTATGTTGCGATGAAAAAATTGGCTGAGCTGACAGAGGATGGAGATGATGGAAGGGAGGAAAATGAGGACTCGAAAGGATTTGAGGAATCAAGAATTCCTACTGCGTTTGTTGTTACCCCTGAGGTTGTGGCCCGGAAGCCCACCTTCCCTGAGAATAGCAGGACTGTAATGGATGTATTGGTATCATTGATATACAAGTATGGAGATGAGCGAACTAAAGCACGAGCAATGCTCTGTGATATATACCACCATGCTCTTCTTGATGAGTTCTCAATTGCCCGTGATCTGCTGCTCATGAGTCATTTGCAAGATAGTGTTCAGCATATGGACATTTCAACGCAGATACTTTTTAACAGAGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTCATTTCTGAAGCACATGGCTGTCTGTCTGAACTGTACTCTGGTGGAAGGGTGAAAGAGTTACTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAAAAGACTCCTGAACAGGAAAGGTTGGAAAGAAGACGGCAAATGCCATATCATATGCACATCAATCTTGAGCTCCTGGAGACAGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAACGCAAGGTCATATCTAAGACTTTCCGTCGCTTGCTTGAGGTGAGCGACAAACAAACATTCACTGGTCCACCAGAAAATGTTAGAGATCATGTTATGGCTGCCACAAGGGTTCTTAGCAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGACACCGTGCTTGAGATGCTTAAAGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGAATCCTTGAGCCTAGATCAGCTCACAAATTTTTTTTATCTCCCTGTTTCTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCGAGCTGGGACCAGCCAACTGGGTGCATTCTTTTCCAAGATGTTGAACACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCAACAGAGGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCAGCTGCTGCTGCTGGTAGTGGAACAGCCTCTTCAGGTGGTAGATGGCAAGACCTGTCCCTTTCTCAGCCAAGGCAAAGCAGTGGGCGTGCAGGATATGGTAGCGGTGGTGGAAGGCCAATGGCATTAGGCCAAGCAACCGGGAGCGGCTATTCAAGGGATCGATTGGGACGAGGATCAGGTGCTGGCTATCAGAGTGGACGATATCAAGGGGGTTCATCATTGAGGGGACCCCAGGGCAATGCATCTACACGCATGGTTAGCCTTAAGGGTGTTCGTGCTTAA 2799 0.4559 MASKFWDQGGSDSEEEESDYDEEVETAVGESASQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESDKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRENPESEEEKEEEESEEEYESDDEIIEPEQLRKPEAKSDSEASQYDDERQDAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLIILDILVQYTNIVVDDSVEPDENETQKGIDYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLKDEPLFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYVAMKKLAELTEDGDDGREENEDSKGFEESRIPTAFVVTPEVVARKPTFPENSRTVMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLETVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSDKQTFTGPPENVRDHVMAATRVLSKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTNFFYLPVSRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGSGTASSGGRWQDLSLSQPRQSSGRAGYGSGGGRPMALGQATGSGYSRDRLGRGSGAGYQSGRYQGGSSLRGPQGNASTRMVSLKGVRA 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03313 932 MobiDBLite consensus disorder prediction 904 924 - -
Pumo5g03313 932 MobiDBLite consensus disorder prediction 848 868 - -
Pumo5g03313 932 MobiDBLite consensus disorder prediction 134 229 - -
Pumo5g03313 932 Pfam PCI domain 660 788 IPR000717 -
Pumo5g03313 932 Coils Coil 144 171 - -
Pumo5g03313 932 MobiDBLite consensus disorder prediction 45 63 - -
Pumo5g03313 932 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Pumo5g03313 932 MobiDBLite consensus disorder prediction 839 932 - -
Pumo5g03313 932 MobiDBLite consensus disorder prediction 30 44 - -
Pumo5g03313 932 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 879 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo5g03313 932 MobiDBLite consensus disorder prediction 1 63 - -
Pumo5g03313 932 MobiDBLite consensus disorder prediction 194 229 - -
Pumo5g03313 932 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 927 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo5g03313 932 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Pumo5g03313 932 MobiDBLite consensus disorder prediction 175 193 - -
Pumo5g03313 932 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo5g03313 932 MobiDBLite consensus disorder prediction 135 154 - -
Pumo5g03313 932 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 IPR000717 -
Pumo5g03313 932 MobiDBLite consensus disorder prediction 155 174 - -
Pumo5g03313 932 MobiDBLite consensus disorder prediction 12 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03313 Pumo-Chr5 82301387 82305722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03313 1 932 Eukaryotic Initiation Factors Gene Family AT3G56150 67.983 0.0 1186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03313 K03252 - gmx:100805203 1595.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03313 5 82301387 82305722 Pumo1g00186 1 2960566 2965875 ECH
Pumo5g03313 5 82301387 82305722 Pumo5g03313 5 82301387 82305722 ECH