Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03299 ATGAGGAGCTTCAGGATGAGAAACTTGTTGTCCCGTGTCAAAAAGAAAAGCATCAAAAACAGAAACAGAACCTCACCAAACTGCATTTCCATAACAAAGGAGTTAGCACATCTAGTGGAACAAGAAGAAGAAGAAGAAGAAGTTAACGAGGAAGGCTTCAACATCAAAAGCTCTGCCCCATCACACACTCACGGTGTTCAACCCTTGGGGAATCTCTATCTGAACCCAGGTTCCACCAACTCCAGAGACACTGGCTTAGGTAATCTTCATACCCTTTCGGACGAGCTTGTTCTTGACATTCTCGGCCTTTTGGATGCTACTTCCTTAGGGGTTTTGGCCACTGTGAGCAAGTCTTTCTACGTCTTCACCAACCATGAACCCCTTTGGAGGAATCTCGTGTTGGAGAATCTTCTCGCTGGGTTTCAGTACAAAGGGTCTTGGAAATCCACTTATGTTTCTGCTTGTTACCCTTCATTTGATAATAACTTCGCTATTGCTCTTGGGGGCTTCAAAGTTAGAGACTTTTATTCGGATTATCTTTTCCAGAGTTGGCTCTGTGCTAACCTTGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGGAAGAGAGGGATTTCGGTTGAAGAGTTTGTGTTGAGTTTTGAGGAGCCTAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGGTGCTTTGAGGAATTGGGATAGGGATTATTTGGTGAGGTTGTGTGGTGATGTTAAGTTTGCAGTTGGGCCAGTGGAGATGAAGCTTGGAGAGTATTTTGGGTACTCGGATCAGGTTAGAGAGGAAAGGCCTTTGTATTTGTTTGATCCTAAGTTTGCTGAGAAAGTTCCGAAATTGGGTGATGAATATGAAGTTCCAGTGTACTTTAGGGAGGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCGGACTACAGGTGGGTTATTATTGGACCAGCTGGGTCTGGATCTTCTTTCCATGTTGATCCGAACTCAACTTCGGCTTGGAATGCAGTGATCAAGGGGTCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCGCCTGGCGTTCATCCTAGTCCTGATGGTGCGGAGGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACCAAAAATTGGAAAAAGAAACCAATTGAGTGCGTATGTAAAGCTGGAGAGGTGATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGTTAAATGTCTTGGATTTTCTTCAAAGGCCAAATGCTAGCACACTGGTATCTGGGACAAGGGATCGAGTGAATTTGTACGATAAGTTTAAGAATGCTATTGAAGCTTCTTTTCCCGGAGAAATTGATGAATTGACTCAAAAAGAAGAGAGAAATATCCAGCAGAGGAAAGTTTCCTTTTGGGATTCTGTCACAGATGCTAATGCAGGAGCATTCAAGTTCTCTTTCTAG 1533 0.4344 MRSFRMRNLLSRVKKKSIKNRNRTSPNCISITKELAHLVEQEEEEEEVNEEGFNIKSSAPSHTHGVQPLGNLYLNPGSTNSRDTGLGNLHTLSDELVLDILGLLDATSLGVLATVSKSFYVFTNHEPLWRNLVLENLLAGFQYKGSWKSTYVSACYPSFDNNFAIALGGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLSFEEPNKPVLLEGCIDNWGALRNWDRDYLVRLCGDVKFAVGPVEMKLGEYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFGVLGNERPDYRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPIECVCKAGEVIFVPSGWWHLVINLEESIAITQNYVSRRNLLNVLDFLQRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTQKEERNIQQRKVSFWDSVTDANAGAFKFSF 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03299 510 FunFam F-box protein At1g78280 181 431 - -
Pumo5g03299 510 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 86 508 - -
Pumo5g03299 510 SUPERFAMILY F-box domain 84 154 IPR036047 GO:0005515
Pumo5g03299 510 SMART cupin_9 277 446 IPR003347 -
Pumo5g03299 510 Gene3D - 81 161 - -
Pumo5g03299 510 ProSiteProfiles JmjC domain profile. 286 446 IPR003347 -
Pumo5g03299 510 MobiDBLite consensus disorder prediction 55 74 - -
Pumo5g03299 510 Pfam F-box-like 94 134 IPR001810 GO:0005515
Pumo5g03299 510 Coils Coil 31 51 - -
Pumo5g03299 510 Gene3D Cupin 182 431 - -
Pumo5g03299 510 Pfam Cupin-like domain 212 429 IPR041667 -
Pumo5g03299 510 ProSiteProfiles F-box domain profile. 86 132 IPR001810 GO:0005515
Pumo5g03299 510 SUPERFAMILY Clavaminate synthase-like 203 444 - -
Pumo5g03299 510 SMART fbox_2 92 132 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03299 Pumo-Chr5 82175432 82178561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03299 77 435 Glycosyltransferase AT1G78280 38.859 9.62e-77 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo5g03299 Cupin_8 3.3e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03299 - - gmx:100782241 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03299 5 82175432 82178561 Pumo5g03299 5 82175432 82178561 ECH