Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03291 ATGTATTCGCAGAATGTTGTAGAGATGGAAGGCAAGACAGAAAGTCATATGACATCGGCTGCGGCCTTTGTTGAAGGGGGTATTCAAGAATCCTGTGATGATGCTTGCAGCATATGTCTTGAGGAGTTTTCTGCAAGTGATCCTTCAACGCTCACTACCTGCAAGCATGAGTTTCACCTGCAGTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATCCTACTAGTCAGGAATTGTTTGAGGCAGTAGAGCAGGAGAGAAGCTTGAGGGCTATCCCATCAAGAAATGCTGCTATTTTTCATCACCCTGCCTTTGGTGATTTTGAATTGCAGCGTTTGCGCATGAGTGTAAATGATGCTGATTTTGAAGAGAGAATTATTCAACATTTAGCTGCTGCTGCAGCAATGAGGAGAGCAAACCAACTTGGTCGGAGGGAAGTGCGGCGAACTCGTTCATCAGCTCATGGTCATCCACACTTCTTAGTGTTCTCTAATCAGCCTATTGCACCTTCATCAGGTCCTGATTCAGTTGCTGGAGGGGAAAATGACCCAACTGCAATTCCTAATAGTCCTATCTACCCCAATAACATCTGA 627 0.4545 MYSQNVVEMEGKTESHMTSAAAFVEGGIQESCDDACSICLEEFSASDPSTLTTCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELFEAVEQERSLRAIPSRNAAIFHHPAFGDFELQRLRMSVNDADFEERIIQHLAAAAAMRRANQLGRREVRRTRSSAHGHPHFLVFSNQPIAPSSGPDSVAGGENDPTAIPNSPIYPNNI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03291 208 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Pumo5g03291 208 MobiDBLite consensus disorder prediction 175 208 - -
Pumo5g03291 208 Pfam Ring finger domain 35 76 IPR001841 -
Pumo5g03291 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 86 IPR013083 -
Pumo5g03291 208 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 20 85 - -
Pumo5g03291 208 FunFam E3 ubiquitin-protein ligase RHF2A 7 110 - -
Pumo5g03291 208 SMART ring_2 36 76 IPR001841 -
Pumo5g03291 208 SUPERFAMILY RING/U-box 28 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03291 Pumo-Chr5 82109102 82111508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03291 33 84 C3H Transcription Factor Family AT4G00335 44.231 1.42e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03291 K19043 - gmx:100800419 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03291 5 82109102 82111508 Pumo5g03291 5 82109102 82111508 ECH
Pumo5g03291 5 82109102 82111508 Pumo3g02973 3 53186667 53191024 PCT