Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03287 ATGATGGGAAACAATTGTGTTGGATCGAAAAACTCAAATGATGCACTATTTCCCTATCTTCTTCCAAGTTCATTCTGGTGGCTTCATCAAACGAGGGTCACAGAAATTTCTGATGCACCTTCACTTGTGACTAAAATTCAAGACACAAATTCTCTAGAGAATGTTCAAGAAAAGCCACCACATGTAGTGAAAATTAACAGCGAGGAGATGAAGCTGAAACCAGTTCCACTTCCACCCAATAAACATGACAAAGAGACTAATATGATGCCTTCAGAGGAACGAATAAGGCACATGCAAAAAAAAATGCCTCATAAAGTTAAGAGTCTAGCAAAAGGGCTTCAAGCAGAGTCAATTTTGAAGACAAAAAGTGGTCCCTTTAAGGAGTACTATAATTTGGGACAAGAGCTTGGGAAGGGGCAATATGGAACGACATTCCTTTGCACTGAGAAAGCCACTGGGAAAAAGTATGCATGCAAGTCCATTCCAAAAGTGAAATTGGTTATGGATGATGATGTGGAGGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGAGGGGTGCTCCAATGTGATATCAATTAAAGGGGCTTATGAGGATGGTGTTGCTGTTTATGTTGTGATGGAATTGTGTGAAGGGGGTGAACTGTTTGATAGGATTGTGGAAAGGGGGCATTACACAGAGAGAAAAGCAGCTAAACTTGCAAGGACTATAGTTAGTGTTATAGAGGGGTGCCACTCCCTTGGAGTTATGCATCGGGATCTTAAGCCTGAGAACTTTCTTTTCGTTGATGGGAATGAAGAGTCCACCCTTAAGGCGATAGATTTTGGATTGTCTGTTTTCTTCAAACCAGGAGAAATTTTTAGGGACGTGGTAGGAAGTCCATATTACATTGCACCTGAAGTTCTACGTAGGCATTATGGTCCAGAAGCTGATGTGTGGAGTGCGGGTGTGATCATATACATTCTCTTATGCGGAACACCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAAGAAGTTTTGCATGGTGATCTTGATTTCTCTTCAGATCCTTGGCTGAATATCTCTGAAAGTGCTAAAGACTTGGTTAGGAAAATGCTTGTTAGAGATCCTAGAAAACGGATAACAGCACAGGAAGTTCTTCGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTTAGTCGCCTGAAGCAGTTCTCTGTAATGAACAAGCTCAAAAAAGTGGCTCTTAGAGTTATTGCAGAGAATCTCTCAGAAGAAGAAATTTCTGATCTGAAAGTAATGTTTAAGATGATAGACACAGACAACAGTGGTCAAATTACTTTAGAAAAACTCAAGGCTGGATTGAAAATGCTTGGTGCAAATCTCAGTGAACCAGAAATTTTGGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGACTACGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGACAGAGAAGATCATTTAGTTGCAGCTTTTTCCTTTTTTGATAGAAGTGGAAGTGGCTACATCACTCAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCATGGAGAATGTCTGCTTGGAGGAAATGATCCAAGAAGCTGATCAGAATAATGATGGCCGAATAGACTACAATGAATTCGTGGCAATGATGCAGAGAGGCAATGCAGATTTAAGTAAAAACGGTTTAAAGGGTGGCACTGATTTTAGTATTGGATTTAGGGAGGCACTATCAGTGTGTTGA 1788 0.406 MMGNNCVGSKNSNDALFPYLLPSSFWWLHQTRVTEISDAPSLVTKIQDTNSLENVQEKPPHVVKINSEEMKLKPVPLPPNKHDKETNMMPSEERIRHMQKKMPHKVKSLAKGLQAESILKTKSGPFKEYYNLGQELGKGQYGTTFLCTEKATGKKYACKSIPKVKLVMDDDVEDVRREIEIMHHLEGCSNVISIKGAYEDGVAVYVVMELCEGGELFDRIVERGHYTERKAAKLARTIVSVIEGCHSLGVMHRDLKPENFLFVDGNEESTLKAIDFGLSVFFKPGEIFRDVVGSPYYIAPEVLRRHYGPEADVWSAGVIIYILLCGTPPFWGESEQEIFEEVLHGDLDFSSDPWLNISESAKDLVRKMLVRDPRKRITAQEVLRHPWIQVDGVAPDKPLDSAVFSRLKQFSVMNKLKKVALRVIAENLSEEEISDLKVMFKMIDTDNSGQITLEKLKAGLKMLGANLSEPEILDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFSFFDRSGSGYITQDELQKACEEFGMENVCLEEMIQEADQNNDGRIDYNEFVAMMQRGNADLSKNGLKGGTDFSIGFREALSVC 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03287 595 CDD EFh 435 495 IPR002048 GO:0005509
Pumo5g03287 595 CDD STKc_CAMK 130 387 - -
Pumo5g03287 595 Gene3D Transferase(Phosphotransferase) domain 1 207 399 - -
Pumo5g03287 595 ProSiteProfiles Protein kinase domain profile. 130 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03287 595 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Pumo5g03287 595 FunFam Calcium-dependent protein kinase 1 isoform A 132 215 - -
Pumo5g03287 595 FunFam Calcium-dependent protein kinase SK5 216 400 - -
Pumo5g03287 595 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Pumo5g03287 595 ProSitePatterns EF-hand calcium-binding domain. 516 528 IPR018247 -
Pumo5g03287 595 ProSiteProfiles EF-hand calcium-binding domain profile. 542 572 IPR002048 GO:0005509
Pumo5g03287 595 ProSiteProfiles EF-hand calcium-binding domain profile. 503 538 IPR002048 GO:0005509
Pumo5g03287 595 SUPERFAMILY Protein kinase-like (PK-like) 128 389 IPR011009 -
Pumo5g03287 595 Gene3D - 400 571 - -
Pumo5g03287 595 Pfam Protein kinase domain 130 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03287 595 SMART serkin_6 130 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03287 595 SUPERFAMILY EF-hand 417 568 IPR011992 -
Pumo5g03287 595 PANTHER SERINE/THREONINE-PROTEIN KINASE 119 562 - -
Pumo5g03287 595 Pfam EF-hand domain pair 435 496 IPR002048 GO:0005509
Pumo5g03287 595 Pfam EF-hand domain pair 508 567 IPR002048 GO:0005509
Pumo5g03287 595 CDD EFh 507 567 IPR002048 GO:0005509
Pumo5g03287 595 Gene3D Phosphorylase Kinase; domain 1 118 206 - -
Pumo5g03287 595 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Pumo5g03287 595 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Pumo5g03287 595 ProSitePatterns EF-hand calcium-binding domain. 550 562 IPR018247 -
Pumo5g03287 595 SMART efh_1 541 569 IPR002048 GO:0005509
Pumo5g03287 595 SMART efh_1 435 463 IPR002048 GO:0005509
Pumo5g03287 595 SMART efh_1 507 535 IPR002048 GO:0005509
Pumo5g03287 595 SMART efh_1 471 499 IPR002048 GO:0005509
Pumo5g03287 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Pumo5g03287 595 FunFam Calcium-dependent protein kinase 1 396 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03287 Pumo-Chr5 82078831 82083654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03287 2 570 EF-hand Containing Proteins AT3G10660 61.085 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo5g03287 Pkinase 1.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03287 K13412 - gmx:100814475 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03287 5 82078831 82083654 Pumo3g03446 3 67938275 67945398 PCT
Pumo3g02979 3 53241454 53242155 Pumo5g03287 5 82078831 82083654 PCT